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Christopher Quince
Christopher Quince
Earlham Institute
Verified email at earlham.ac.uk
Title
Cited by
Cited by
Year
UCHIME improves sensitivity and speed of chimera detection
RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight
Bioinformatics 27 (16), 2194-2200, 2011
141372011
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
74842016
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
21912017
Binning metagenomic contigs by coverage and composition
J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ...
Nature methods 11 (11), 1144-1146, 2014
18162014
Removing noise from pyrosequenced amplicons
C Quince, A Lanzen, RJ Davenport, PJ Turnbaugh
BMC bioinformatics 12, 1-18, 2011
16642011
Shotgun metagenomics, from sampling to analysis
C Quince, AW Walker, JT Simpson, NJ Loman, N Segata
Nature biotechnology 35 (9), 833-844, 2017
15712017
Anvi’o: an advanced analysis and visualization platform for ‘omics data
AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ...
PeerJ 3, e1319, 2015
14952015
Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section
HE Jakobsson, TR Abrahamsson, MC Jenmalm, K Harris, C Quince, ...
Gut 63 (4), 559-566, 2014
12172014
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
11832019
Accurate determination of microbial diversity from 454 pyrosequencing data
C Quince, A Lanzén, TP Curtis, RJ Davenport, N Hall, IM Head, LF Read, ...
Nature methods 6 (9), 639-641, 2009
11822009
VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
9412016
Enterotypes in the landscape of gut microbial community composition
PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ...
Nature microbiology 3 (1), 8-16, 2018
8672018
Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
M Schirmer, UZ Ijaz, R D'Amore, N Hall, WT Sloan, C Quince
Nucleic acids research 43 (6), e37-e37, 2015
8312015
Swarm: robust and fast clustering method for amplicon-based studies
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 2, e593, 2014
8162014
Dirichlet multinomial mixtures: generative models for microbial metagenomics
I Holmes, K Harris, C Quince
PloS one 7 (2), e30126, 2012
7702012
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7342017
Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
The ISME journal 10 (11), 2557-2568, 2016
6602016
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
PJ Turnbaugh, C Quince, JJ Faith, AC McHardy, T Yatsunenko, F Niazi, ...
Proceedings of the National Academy of Sciences 107 (16), 7503-7508, 2010
6052010
Swarm v2: highly-scalable and high-resolution amplicon clustering
F Mahé, T Rognes, C Quince, C De Vargas, M Dunthorn
PeerJ 3, e1420, 2015
5152015
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature microbiology 3 (7), 804-813, 2018
4752018
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