A. Sina Booeshaghi
A. Sina Booeshaghi
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Cited by
Cited by
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
P Melsted*, AS Booeshaghi*, L Liu, F Gao, L Lu, KHJ Min, ...
Nature biotechnology, 1-6, *co-first author, 2021
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples
JS Bloom, L Sathe, C Munugala, EM Jones, M Gasperini, NB Lubock, ...
Nature Biomedical Engineering 5 (7), 657-665, 2021
Isoform cell-type specificity in the mouse primary motor cortex
AS Booeshaghi, Z Yao, C van Velthoven, K Smith, B Tasic, H Zeng, ...
Nature 598 (7879), 195-199, 2021
Principles of open source bioinstrumentation applied to the poseidon syringe pump system
AS Booeshaghi, EV Beltrame, D Bannon, J Gehring, L Pachter
Scientific reports 9 (1), 12385, 2019
Thermo-electrochemical generator: energy harvesting & thermoregulation for liquid cooling applications
AH Kazim, AS Booeshaghi, ST Stephens, BA Cola
Sustainable Energy & Fuels 1 (6), 1381-1389, 2017
Normalization of single-cell RNA-seq counts by log(x + 1) or log(1 + x)
AS Booeshaghi, L Pachter
Bioinformatics 37 (15), 2223-2224, 2021
Depth normalization for single-cell genomics count data
AS Booeshaghi, IB Hallgrímsdóttir, A Gálvez-Merchán, L Pachter
BioRxiv, 2022.05. 06.490859, 2022
Markedly heterogeneous COVID-19 testing plans among US colleges and universities
AS Booeshaghi*, FH Tan*, B Renton, Z Berger, L Pachter
medRxiv, *co-first author, 2020
Metadata retrieval from sequence databases with ffq
Á Gálvez-Merchán, KH Min, L Pachter, AS Booeshaghi
Bioinformatics 39 (1), btac667, 2023
Reliable and accurate diagnostics from highly multiplexed sequencing assays
AS Booeshaghi, NB Lubock, AR Cooper, SW Simpkins, JS Bloom, ...
Scientific Reports 10 (1), 21759, 2020
Decrease in ACE2 mRNA expression in aged mouse lung
AS Booeshaghi, L Pachter
biorxiv, 2020.04. 02.021451, 2020
A machine-readable specification for genomics assays
AS Booeshaghi, X Chen, L Pachter
Bioinformatics 40 (4), btae168, 2024
Low-cost, scalable, and automated fluid sampling for fluidics applications
AS Booeshaghi*, YA Kil*, KHJ Min, J Gehring, L Pachter
HardwareX, e00201, *co-first author, 2021
Voyager: exploratory single-cell genomics data analysis with geospatial statistics
L Moses, PH Einarsson, K Jackson, L Luebbert, AS Booeshaghi, ...
bioRxiv, 2023
Assessing the multimodal tradeoff
AS Booeshaghi, F Gao, L Pachter
BioRxiv, 2021.12. 08.471788, 2021
Quantifying orthogonal barcodes for sequence census assays
AS Booeshaghi, KH Min, J Gehring, L Pachter
Bioinformatics Advances 4 (1), vbad181, 2024
kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq
DK Sullivan, KHJ Min, KE Hjörleifsson, L Luebbert, G Holley, L Moses, ...
bioRxiv, 2023
Benchmarking of lightweight-mapping based single-cell RNA-seq pre-processing
AS Booeshaghi, L Pachter
bioRxiv, 2021.01. 25.428188, 2021
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