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Derek Bickhart
Derek Bickhart
Research Geneticist, USDA ARS
Verified email at ars.usda.gov
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Cited by
Year
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ...
Nature genetics 49 (4), 643-650, 2017
5802017
metaFlye: scalable long-read metagenome assembly using repeat graphs
M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ...
Nature Methods 17 (11), 1103-1110, 2020
5562020
De novo assembly of the cattle reference genome with single-molecule sequencing
BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ...
Gigascience 9 (3), giaa021, 2020
4562020
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ...
Genome research 17 (1), 7-15, 2007
4232007
De novo assembly of haplotype-resolved genomes with trio binning
S Koren, A Rhie, BP Walenz, AT Dilthey, DM Bickhart, SB Kingan, ...
Nature biotechnology 36 (12), 1174-1182, 2018
4162018
Copy number variation of individual cattle genomes using next-generation sequencing
DM Bickhart, Y Hou, SG Schroeder, C Alkan, MF Cardone, ...
Genome research 22 (4), 778-790, 2012
3472012
Genomic characteristics of cattle copy number variations
Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang, E Kim, LK Matukumalli, ...
BMC genomics 12, 1-11, 2011
2452011
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
O Zhaxybayeva, KS Swithers, P Lapierre, GP Fournier, DM Bickhart, ...
Proceedings of the National Academy of Sciences 106 (14), 5865-5870, 2009
2432009
Scaffolding of long read assemblies using long range contact information
J Ghurye, M Pop, S Koren, D Bickhart, CS Chin
BMC genomics 18, 1-11, 2017
2342017
An improved pig reference genome sequence to enable pig genetics and genomics research
A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ...
Gigascience 9 (6), giaa051, 2020
2252020
Cattle sex-specific recombination and genetic control from a large pedigree analysis
L Ma, JR O'Connell, PM VanRaden, B Shen, A Padhi, C Sun, DM Bickhart, ...
PLoS genetics 11 (11), e1005387, 2015
1962015
Genomic signatures reveal new evidences for selection of important traits in domestic cattle
L Xu, DM Bickhart, JB Cole, SG Schroeder, J Song, CPV Tassell, ...
Molecular biology and evolution 32 (3), 711-725, 2015
1652015
Selecting sequence variants to improve genomic predictions for dairy cattle
PM VanRaden, ME Tooker, JR O’connell, JB Cole, DM Bickhart
Genetics Selection Evolution 49, 1-12, 2017
1522017
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
LR Porto-Neto, TS Sonstegard, GE Liu, DM Bickhart, MVB Da Silva, ...
BMC genomics 14, 1-12, 2013
1472013
Genome to phenome: improving animal health, production, and well-being–a new USDA blueprint for animal genome research 2018–2027
C Rexroad, J Vallet, LK Matukumalli, J Reecy, D Bickhart, H Blackburn, ...
Frontiers in genetics 10, 327, 2019
1412019
Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity
WY Low, R Tearle, DM Bickhart, BD Rosen, SB Kingan, T Swale, ...
Nature communications 10 (1), 260, 2019
1372019
The challenges and importance of structural variation detection in livestock
DM Bickhart, GE Liu
Frontiers in genetics 5, 37, 2014
1352014
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
Nature biotechnology 40 (5), 711-719, 2022
1332022
Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle
TS Sonstegard, JB Cole, PM VanRaden, CP Van Tassell, DJ Null, ...
PloS one 8 (1), e54872, 2013
1332013
Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle
Y Hou, GE Liu, DM Bickhart, LK Matukumalli, C Li, J Song, LC Gasbarre, ...
Functional & integrative genomics 12, 81-92, 2012
1232012
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