Michal Otyepka
Michal Otyepka
CATRIN, Palacký University; IT4Innovations, VŠB Technical University of Ostrava
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Functionalization of graphene: covalent and non-covalent approaches, derivatives and applications
V Georgakilas, M Otyepka, AB Bourlinos, V Chandra, N Kim, KC Kemp, ...
Chemical reviews 112 (11), 6156-6214, 2012
Refinement of the Cornell et al. nucleic acids force field based on reference quantum chemical calculations of glycosidic torsion profiles
M Zgarbová, M Otyepka, J Sponer, A Mladek, P Banas, TE Cheatham III, ...
Journal of chemical theory and computation 7 (9), 2886-2902, 2011
Graphitic nitrogen triggers red fluorescence in carbon dots
K Hola, M Sudolská, S Kalytchuk, D Nachtigallová, AL Rogach, ...
ACS nano 11 (12), 12402-12410, 2017
CAVER: a new tool to explore routes from protein clefts, pockets and cavities
M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský
BMC bioinformatics 7, 1-9, 2006
Stabilizing and modulating color by copigmentation: Insights from theory and experiment
P Trouillas, JC Sancho-García, V De Freitas, J Gierschner, M Otyepka, ...
Chemical reviews 116 (9), 4937-4982, 2016
Adsorption of small organic molecules on graphene
P Lazar, F Karlicky, P Jurecka, M Kocman, E Otyepková, K Šafářová, ...
Journal of the American Chemical Society 135 (16), 6372-6377, 2013
Graphene fluoride: a stable stoichiometric graphene derivative and its chemical conversion to graphene
R Zbořil, F Karlický, AB Bourlinos, TA Steriotis, AK Stubos, V Georgakilas, ...
small 6 (24), 2885-2891, 2010
Refinement of the sugar–phosphate backbone torsion beta for AMBER force fields improves the description of Z-and B-DNA
M Zgarbová, J Sponer, M Otyepka, TE Cheatham III, R Galindo-Murillo, ...
Journal of chemical theory and computation 11 (12), 5723-5736, 2015
RNA structural dynamics as captured by molecular simulations: a comprehensive overview
J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ...
Chemical reviews 118 (8), 4177-4338, 2018
Halogenated graphenes: rapidly growing family of graphene derivatives
F Karlicky, K Kumara Ramanatha Datta, M Otyepka, R Zboril
ACS nano 7 (8), 6434-6464, 2013
Assessing the current state of amber force field modifications for DNA
R Galindo-Murillo, JC Robertson, M Zgarbova, J Sponer, M Otyepka, ...
Journal of chemical theory and computation 12 (8), 4114-4127, 2016
Biomimetic superhydrophobic/superoleophilic highly fluorinated graphene oxide and ZIF‐8 composites for oil–water separation
K Jayaramulu, KKR Datta, C Rösler, M Petr, M Otyepka, R Zboril, ...
Angewandte Chemie International Edition 55 (3), 1178-1182, 2016
Performance of molecular mechanics force fields for RNA simulations: stability of UUCG and GNRA hairpins
P Banás, D Hollas, M Zgarbová, P Jurecka, M Orozco, TE Cheatham III, ...
Journal of Chemical Theory and Computation 6 (12), 3836-3849, 2010
MOLE 2.0: advanced approach for analysis of biomacromolecular channels
D Sehnal, R Svobodová Vařeková, K Berka, L Pravda, V Navrátilová, ...
Journal of cheminformatics 5, 1-13, 2013
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ...
Nature chemical biology 5 (10), 727-733, 2009
MOLE: a Voronoi diagram-based explorer of molecular channels, pores, and tunnels
M Petřek, P Košinová, J Koča, M Otyepka
Structure 15 (11), 1357-1363, 2007
Toward improved description of DNA backbone: revisiting epsilon and zeta torsion force field parameters
M Zgarbová, FJ Luque, J Sponer, TE Cheatham III, M Otyepka, P Jurecka
Journal of chemical theory and computation 9 (5), 2339-2354, 2013
Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA, and Z-DNA
M Krepl, M Zgarbová, P Stadlbauer, M Otyepka, P Banas, J Koca, ...
Journal of chemical theory and computation 8 (7), 2506-2520, 2012
Photoluminescence effects of graphitic core size and surface functional groups in carbon dots: COO− induced red-shift emission
K Hola, AB Bourlinos, O Kozak, K Berka, KM Siskova, M Havrdova, ...
Carbon 70, 279-286, 2014
Chemistry, properties, and applications of fluorographene
DD Chronopoulos, A Bakandritsos, M Pykal, R Zbořil, M Otyepka
Applied materials today 9, 60-70, 2017
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