Ning Jiang
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The B73 maize genome: complexity, diversity, and dynamics
PS Schnable, D Ware, RS Fulton, JC Stein, F Wei, S Pasternak, C Liang, ...
science 326 (5956), 1112-1115, 2009
Genome sequencing and analysis of the model grass Brachypodium distachyon
DNA sequencing and assembly Barry Kerrie 5 Lucas Susan 5 Harmon-Smith ...
Nature 463 (7282), 763-768, 2010
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ...
Nature 452 (7190), 991-996, 2008
Plant transposable elements: where genetics meets genomics
C Feschotte, N Jiang, SR Wessler
Nature Reviews Genetics 3 (5), 329-341, 2002
LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons
S Ou, N Jiang
Plant physiology 176 (2), 1410-1422, 2018
Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
JJ Smith, S Kuraku, C Holt, T Sauka-Spengler, N Jiang, MS Campbell, ...
Nature genetics 45 (4), 415-421, 2013
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
S Ou, W Su, Y Liao, K Chougule, JRA Agda, AJ Hellinga, CSB Lugo, ...
Genome biology 20, 1-18, 2019
Pack-MULE transposable elements mediate gene evolution in plants
N Jiang, Z Bao, X Zhang, SR Eddy, SR Wessler
Nature 431 (7008), 569-573, 2004
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit
H Xiao, N Jiang, E Schaffner, EJ Stockinger, E van der Knaap
science 319 (5869), 1527-1530, 2008
Origin and evolution of the octoploid strawberry genome
PP Edger, TJ Poorten, R VanBuren, MA Hardigan, M Colle, MR McKain, ...
Nature genetics 51 (3), 541-547, 2019
An active DNA transposon family in rice
N Jiang, Z Bao, X Zhang, H Hirochika, SR Eddy, SR McCouch, ...
Nature 421 (6919), 163-167, 2003
Assessing genome assembly quality using the LTR Assembly Index (LAI)
S Ou, J Chen, N Jiang
Nucleic acids research 46 (21), e126-e126, 2018
Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779
A Vieler, G Wu, CH Tsai, B Bullard, AJ Cornish, C Harvey, IB Reca, ...
PLoS genetics 8 (11), e1003064, 2012
MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations
MS Campbell, MY Law, C Holt, JC Stein, GD Moghe, DE Hufnagel, J Lei, ...
Plant physiology 164 (2), 513-524, 2014
An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
FA Feltus, J Wan, SR Schulze, JC Estill, N Jiang, AH Paterson
Genome research 14 (9), 1812-1819, 2004
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
R Ming, R VanBuren, Y Liu, M Yang, Y Han, LT Li, Q Zhang, MJ Kim, ...
Genome biology 14, 1-11, 2013
Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
P Qin, H Lu, H Du, H Wang, W Chen, Z Chen, Q He, S Ou, H Zhang, X Li, ...
Cell 184 (13), 3542-3558. e16, 2021
Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution
RM Davidson, M Gowda, G Moghe, H Lin, B Vaillancourt, SH Shiu, ...
The Plant Journal 71 (3), 492-502, 2012
Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity
PP Edger, R VanBuren, M Colle, TJ Poorten, CM Wai, CE Niederhuth, ...
Gigascience 7 (2), gix124, 2018
Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery
DG Peterson, SR Schulze, EB Sciara, SA Lee, JE Bowers, A Nagel, ...
Genome Research 12 (5), 795-807, 2002
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