Nicolas Bray
Nicolas Bray
Postdoctoral scholar, Molecular&Cell Biology, UC Berkeley
Verified email at
Cited by
Cited by
Initial sequencing and comparative analysis of the mouse genome
European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ...
Nature 420 (6915), 520-562, 2002
Near-optimal probabilistic RNA-seq quantification
NL Bray, H Pimentel, P Melsted, L Pachter
Nature biotechnology 34 (5), 525-527, 2016
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ...
Nature 428 (6982), 493-521, 2004
Differential analysis of RNA-seq incorporating quantification uncertainty
H Pimentel, NL Bray, S Puente, P Melsted, L Pachter
Nature methods 14 (7), 687-690, 2017
A high-resolution atlas of nucleosome occupancy in yeast
W Lee, D Tillo, N Bray, RH Morse, RW Davis, TR Hughes, C Nislow
Nature genetics 39 (10), 1235-1244, 2007
Nanoparticle delivery of Cas9 ribonucleoprotein and donor DNA in vivo induces homology-directed DNA repair
K Lee, M Conboy, HM Park, F Jiang, HJ Kim, MA Dewitt, VA Mackley, ...
Nature biomedical engineering 1 (11), 889-901, 2017
AVID: A global alignment program
N Bray, I Dubchak, L Pachter
Genome research 13 (1), 97-102, 2003
A genome-wide map of conserved microRNA targets in C. elegans
S Lall, D Grün, A Krek, K Chen, YL Wang, CN Dewey, P Sood, T Colombo, ...
Current biology 16 (5), 460-471, 2006
Selection-free genome editing of the sickle mutation in human adult hematopoietic stem/progenitor cells
MA DeWitt, W Magis, NL Bray, T Wang, JR Berman, F Urbinati, SJ Heo, ...
Science translational medicine 8 (360), 360ra134-360ra134, 2016
MAVID: constrained ancestral alignment of multiple sequences
N Bray, L Pachter
Genome research 14 (4), 693-699, 2004
Disabling Cas9 by an anti-CRISPR DNA mimic
J Shin, F Jiang, JJ Liu, NL Bray, BJ Rauch, SH Baik, E Nogales, ...
Science advances 3 (7), e1701620, 2017
Discovery of stimulation-responsive immune enhancers with CRISPR activation
DR Simeonov, BG Gowen, M Boontanrart, TL Roth, JD Gagnon, ...
Nature 549 (7670), 111-115, 2017
Strategies and tools for whole-genome alignments
O Couronne, A Poliakov, N Bray, T Ishkhanov, D Ryaboy, E Rubin, ...
Genome research 13 (1), 73-80, 2003
CRISPR–Cas9 genome editing in human cells occurs via the Fanconi anemia pathway
CD Richardson, KR Kazane, SJ Feng, E Zelin, NL Bray, AJ Schäfer, ...
Nature genetics 50 (8), 1132-1139, 2018
Gene-level differential analysis at transcript-level resolution
L Yi, H Pimentel, NL Bray, L Pachter
Genome biology 19, 1-11, 2018
Pseudoalignment for metagenomic read assignment
L Schaeffer, H Pimentel, N Bray, P Melsted, L Pachter
Bioinformatics 33 (14), 2082-2088, 2017
MAVID multiple alignment server
N Bray, L Pachter
Nucleic acids research 31 (13), 3525-3526, 2003
Non-homologous DNA increases gene disruption efficiency by altering DNA repair outcomes
CD Richardson, GJ Ray, NL Bray, JE Corn
Nature communications 7 (1), 12463, 2016
Controlled cycling and quiescence enables efficient HDR in engraftment-enriched adult hematopoietic stem and progenitor cells
JJ Shin, MS Schröder, F Caiado, SK Wyman, NL Bray, M Bordi, MA Dewitt, ...
Cell reports 32 (9), 2020
Expression reflects population structure
BC Brown, NL Bray, L Pachter
PLoS genetics 14 (12), e1007841, 2018
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