The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ... Nucleic acids research 41 (D1), D666-D675, 2013 | 671 | 2013 |
Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reeseiusing high-throughput genomic and proteomic analyses L dos Santos Castro, WR Pedersoli, ACC Antoniêto, AS Steindorff, ... Biotechnology for biofuels 7, 1-18, 2014 | 138 | 2014 |
Noise and robustness in prokaryotic regulatory networks R Silva-Rocha, V de Lorenzo Annual review of microbiology 64, 257-275, 2010 | 125 | 2010 |
The post-genomic era of Trichoderma reesei: what's next? VK Gupta, AS Steindorff, RG de Paula, R Silva-Rocha, AR Mach-Aigner, ... Trends in Biotechnology 34 (12), 970-982, 2016 | 110 | 2016 |
Mining logic gates in prokaryotic transcriptional regulation networks R Silva-Rocha, V de Lorenzo FEBS letters 582 (8), 1237-1244, 2008 | 106 | 2008 |
Understanding the role of the master regulator XYR1 in Trichoderma reesei by global transcriptional analysis L dos Santos Castro, RG de Paula, ACC Antonieto, GF Persinoti, ... Frontiers in microbiology 7, 183748, 2016 | 84 | 2016 |
The art of vector engineering: towards the construction of next‐generation genetic tools LC Nora, CA Westmann, L Martins‐Santana, LF Alves, LMO Monteiro, ... Microbial biotechnology 12 (1), 125-147, 2019 | 83 | 2019 |
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening ME Guazzaroni, R Silva‐Rocha, RJ Ward Microbial Biotechnology 8 (1), 52-64, 2015 | 81 | 2015 |
Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects F Almeida, JM Wolf, TA Da Silva, CM DeLeon-Rodriguez, CP Rezende, ... Nature communications 8 (1), 1968, 2017 | 73 | 2017 |
Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis ACC Antoniêto, L dos Santos Castro, R Silva-Rocha, GF Persinoti, ... Fungal genetics and biology 73, 93-103, 2014 | 73 | 2014 |
The private life of environmental bacteria: pollutant biodegradation at the single cell level PI Nikel, R Silva‐Rocha, I Benedetti, V de Lorenzo Environmental microbiology 16 (3), 628-642, 2014 | 72 | 2014 |
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes J Kim, JC Oliveros, PI Nikel, V de Lorenzo, R Silva‐Rocha Environmental microbiology reports 5 (6), 883-891, 2013 | 67 | 2013 |
The Aspergillus fumigatus CrzA Transcription Factor Activates Chitin Synthase Gene Expression during the Caspofungin Paradoxical Effect LNA Ries, MC Rocha, PA De Castro, R Silva-Rocha, RN Silva, FZ Freitas, ... MBio 8 (3), 10.1128/mbio. 00705-17, 2017 | 66 | 2017 |
Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei L dos Santos Castro, ACC Antoniêto, WR Pedersoli, R Silva-Rocha, ... Gene Expression Patterns 14 (2), 88-95, 2014 | 57 | 2014 |
Loving the poison: the methylcitrate cycle and bacterial pathogenesis SK Dolan, A Wijaya, SM Geddis, DR Spring, R Silva-Rocha, M Welch Microbiology 164 (3), 251-259, 2018 | 56 | 2018 |
The impact of chromatin remodelling on cellulase expression in Trichoderma reesei TM Mello-de-Sousa, A Rassinger, ME Pucher, L dos Santos Castro, ... BMC genomics 16, 1-11, 2015 | 51 | 2015 |
Systems and synthetic biology approaches to engineer fungi for fine chemical production L Martins-Santana, LC Nora, A Sanches-Medeiros, GL Lovate, ... Frontiers in Bioengineering and Biotechnology 6, 117, 2018 | 44 | 2018 |
A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides LC Nora, M Wehrs, J Kim, JF Cheng, A Tarver, BA Simmons, J Magnuson, ... Microbial Cell Factories 8, 117, 2019 | 43 | 2019 |
The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid M Koutinas, MC Lam, A Kiparissides, R Silva‐Rocha, M Godinho, ... Environmental microbiology 12 (6), 1705-1718, 2010 | 43 | 2010 |
Transcriptome-wide survey of gene expression changes and alternative splicing in Trichophyton rubrum in response to undecanoic acid NS Mendes, TA Bitencourt, PR Sanches, R Silva-Rocha, ... Scientific reports 8 (1), 1-14, 2018 | 42 | 2018 |