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Rafael Silva Rocha
Rafael Silva Rocha
Founder and CTO at ByMyCell
Verified email at bymycell.com - Homepage
Title
Cited by
Cited by
Year
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ...
Nucleic acids research 41 (D1), D666-D675, 2013
6712013
Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reeseiusing high-throughput genomic and proteomic analyses
L dos Santos Castro, WR Pedersoli, ACC Antoniêto, AS Steindorff, ...
Biotechnology for biofuels 7, 1-18, 2014
1382014
Noise and robustness in prokaryotic regulatory networks
R Silva-Rocha, V de Lorenzo
Annual review of microbiology 64, 257-275, 2010
1252010
The post-genomic era of Trichoderma reesei: what's next?
VK Gupta, AS Steindorff, RG de Paula, R Silva-Rocha, AR Mach-Aigner, ...
Trends in Biotechnology 34 (12), 970-982, 2016
1102016
Mining logic gates in prokaryotic transcriptional regulation networks
R Silva-Rocha, V de Lorenzo
FEBS letters 582 (8), 1237-1244, 2008
1062008
Understanding the role of the master regulator XYR1 in Trichoderma reesei by global transcriptional analysis
L dos Santos Castro, RG de Paula, ACC Antonieto, GF Persinoti, ...
Frontiers in microbiology 7, 183748, 2016
842016
The art of vector engineering: towards the construction of next‐generation genetic tools
LC Nora, CA Westmann, L Martins‐Santana, LF Alves, LMO Monteiro, ...
Microbial biotechnology 12 (1), 125-147, 2019
832019
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening
ME Guazzaroni, R Silva‐Rocha, RJ Ward
Microbial Biotechnology 8 (1), 52-64, 2015
812015
Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects
F Almeida, JM Wolf, TA Da Silva, CM DeLeon-Rodriguez, CP Rezende, ...
Nature communications 8 (1), 1968, 2017
732017
Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis
ACC Antoniêto, L dos Santos Castro, R Silva-Rocha, GF Persinoti, ...
Fungal genetics and biology 73, 93-103, 2014
732014
The private life of environmental bacteria: pollutant biodegradation at the single cell level
PI Nikel, R Silva‐Rocha, I Benedetti, V de Lorenzo
Environmental microbiology 16 (3), 628-642, 2014
722014
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes
J Kim, JC Oliveros, PI Nikel, V de Lorenzo, R Silva‐Rocha
Environmental microbiology reports 5 (6), 883-891, 2013
672013
The Aspergillus fumigatus CrzA Transcription Factor Activates Chitin Synthase Gene Expression during the Caspofungin Paradoxical Effect
LNA Ries, MC Rocha, PA De Castro, R Silva-Rocha, RN Silva, FZ Freitas, ...
MBio 8 (3), 10.1128/mbio. 00705-17, 2017
662017
Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei
L dos Santos Castro, ACC Antoniêto, WR Pedersoli, R Silva-Rocha, ...
Gene Expression Patterns 14 (2), 88-95, 2014
572014
Loving the poison: the methylcitrate cycle and bacterial pathogenesis
SK Dolan, A Wijaya, SM Geddis, DR Spring, R Silva-Rocha, M Welch
Microbiology 164 (3), 251-259, 2018
562018
The impact of chromatin remodelling on cellulase expression in Trichoderma reesei
TM Mello-de-Sousa, A Rassinger, ME Pucher, L dos Santos Castro, ...
BMC genomics 16, 1-11, 2015
512015
Systems and synthetic biology approaches to engineer fungi for fine chemical production
L Martins-Santana, LC Nora, A Sanches-Medeiros, GL Lovate, ...
Frontiers in Bioengineering and Biotechnology 6, 117, 2018
442018
A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides
LC Nora, M Wehrs, J Kim, JF Cheng, A Tarver, BA Simmons, J Magnuson, ...
Microbial Cell Factories 8, 117, 2019
432019
The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid
M Koutinas, MC Lam, A Kiparissides, R Silva‐Rocha, M Godinho, ...
Environmental microbiology 12 (6), 1705-1718, 2010
432010
Transcriptome-wide survey of gene expression changes and alternative splicing in Trichophyton rubrum in response to undecanoic acid
NS Mendes, TA Bitencourt, PR Sanches, R Silva-Rocha, ...
Scientific reports 8 (1), 1-14, 2018
422018
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Articles 1–20