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Paul C Whitford
Paul C Whitford
Associate Professor of Physics, Northeastern University
Dirección de correo verificada de neu.edu - Página principal
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An all‐atom structure‐based potential for proteins: bridging minimal models with all‐atom empirical forcefields
PC Whitford, JK Noel, S Gosavi, A Schug, KY Sanbonmatsu, JN Onuchic
Proteins: Structure, Function, and Bioinformatics 75 (2), 430-441, 2009
3872009
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
AH Ratje, J Loerke, A Mikolajka, M Brünner, PW Hildebrand, AL Starosta, ...
Nature 468 (7324), 713-716, 2010
3802010
SMOG@ ctbp: simplified deployment of structure-based models in GROMACS
JK Noel, PC Whitford, KY Sanbonmatsu, JN Onuchic
Nucleic acids research 38 (suppl_2), W657-W661, 2010
3402010
Conformational transitions of adenylate kinase: switching by cracking
PC Whitford, O Miyashita, Y Levy, JN Onuchic
Journal of molecular biology 366 (5), 1661-1671, 2007
3292007
Nanopore-based measurements of protein size, fluctuations, and conformational changes
P Waduge, R Hu, P Bandarkar, H Yamazaki, B Cressiot, Q Zhao, ...
ACS nano 11 (6), 5706-5716, 2017
2502017
SMOG 2: a versatile software package for generating structure-based models
JK Noel, M Levi, M Raghunathan, H Lammert, RL Hayes, JN Onuchic, ...
PLoS computational biology 12 (3), e1004794, 2016
2432016
The shadow map: a general contact definition for capturing the dynamics of biomolecular folding and function
JK Noel, PC Whitford, JN Onuchic
The journal of physical chemistry B 116 (29), 8692-8702, 2012
2252012
Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways
PC Whitford, P Geggier, RB Altman, SC Blanchard, JN Onuchic, ...
Rna 16 (6), 1196-1204, 2010
2092010
Biomolecular dynamics: order-disorder transitions and energy landscapes
PC Whitford, KY Sanbonmatsu, JN Onuchic
Reports on Progress in Physics 75 (7), 076601, 2012
1282012
Conformational transitions in adenylate kinase: allosteric communication reduces misligation
PC Whitford, S Gosavi, JN Onuchic
Journal of Biological Chemistry 283 (4), 2042-2048, 2008
1202008
Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function
PC Whitford, A Schug, J Saunders, SP Hennelly, JN Onuchic, ...
Biophysical journal 96 (2), L7-L9, 2009
1122009
Excited states of ribosome translocation revealed through integrative molecular modeling
PC Whitford, A Ahmed, Y Yu, SP Hennelly, F Tama, CMT Spahn, ...
Proceedings of the National Academy of Sciences 108 (47), 18943-18948, 2011
992011
Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch
RL Hayes, JK Noel, U Mohanty, PC Whitford, SP Hennelly, JN Onuchic, ...
Journal of the American Chemical Society 134 (29), 12043-12053, 2012
942012
Connecting the kinetics and energy landscape of tRNA translocation on the ribosome
PC Whitford, SC Blanchard, JHD Cate, KY Sanbonmatsu
PLoS computational biology 9 (3), e1003003, 2013
912013
Extracting function from a β-trefoil folding motif
S Gosavi, PC Whitford, PA Jennings, JN Onuchic
Proceedings of the National Academy of Sciences 105 (30), 10384-10389, 2008
902008
Mutations as trapdoors to two competing native conformations of the Rop-dimer
A Schug, PC Whitford, Y Levy, JN Onuchic
Proceedings of the National Academy of Sciences 104 (45), 17674-17679, 2007
752007
Energy landscape along an enzymatic reaction trajectory: hinges or cracks?
PC Whitford, JN Onuchic, PG Wolynes
Taylor & Francis Group 2 (2), 61-64, 2008
702008
How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome
JK Noel, PC Whitford
Nature communications 7 (1), 13314, 2016
672016
Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding
J Wang, RJ Oliveira, X Chu, PC Whitford, J Chahine, W Han, E Wang, ...
Proceedings of the National Academy of Sciences 109 (39), 15763-15768, 2012
672012
Connecting energy landscapes with experimental rates for aminoacyl-tRNA accommodation in the ribosome
PC Whitford, JN Onuchic, KY Sanbonmatsu
Journal of the American Chemical Society 132 (38), 13170-13171, 2010
642010
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Artículos 1–20