| Visualization of omics data for systems biology N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ... Nature methods 7 (Suppl 3), S56-S68, 2010 | 746 | 2010 |
| Comparison of ARM and HEAT protein repeats MA Andrade, C Petosa, SI O’Donoghue, CW MuČller, P Bork Journal of molecular biology 309 (1), 1-18, 2001 | 639 | 2001 |
| COMPARTMENTS: unification and visualization of protein subcellular localization evidence JX Binder, S Pletscher-Frankild, K Tsafou, C Stolte, SI O’Donoghue, ... Database 2014, 2014 | 618 | 2014 |
| Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from β-spectrin M Nilges, MJ Macias, SI O’Donoghue, H Oschkinat Journal of molecular biology 269 (3), 408-422, 1997 | 533 | 1997 |
| Automated assignment of ambiguous nuclear overhauser effects with ARIA JP Linge, SI O'Donoghue, M Nilges Methods in enzymology 339, 71-90, 2001 | 448 | 2001 |
| Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ... Genome research 26 (6), 719-731, 2016 | 356 | 2016 |
| Ambiguous NOEs and automated NOE assignment M Nilges, SI O'Donoghue Progress in nuclear magnetic resonance spectroscopy 32 (2), 107-139, 1998 | 305 | 1998 |
| The structure of a novel insecticidal neurotoxin, ω-atracotoxin-HV1, from the venom of an Australian funnel web spider JI Fletcher, R Smith, SI O'Donoghue, M Nilges, M Connor, MEH Howden, ... Nature structural biology 4 (7), 559-566, 1997 | 233 | 1997 |
| Monogenic and polygenic determinants of sarcoma risk: an international genetic study ML Ballinger, DL Goode, I Ray-Coquard, PA James, G Mitchell, ... The Lancet Oncology 17 (9), 1261-1271, 2016 | 232 | 2016 |
| Adaptation of protein surfaces to subcellular location MA Andrade, SI O’Donoghue, B Rost Journal of molecular biology 276 (2), 517-525, 1998 | 228 | 1998 |
| PredictProtein-predicting protein structure and function for 29 years M Bernhofer, C Dallago, T Karl, V Satagopam, M Heinzinger, M Littmann, ... Nucleic acids research 49 (W1), W535-W540, 2021 | 201 | 2021 |
| Visualization of macromolecular structures SI O'donoghue, DS Goodsell, AS Frangakis, F Jossinet, RA Laskowski, ... Nature methods 7 (3), S42-S55, 2010 | 198 | 2010 |
| Unexpected features of the dark proteome N Perdigăo, J Heinrich, C Stolte, KS Sabir, MJ Buckley, B Tabor, B Signal, ... Proceedings of the National Academy of Sciences 112 (52), 15898-15903, 2015 | 195 | 2015 |
| Visualizing biological data—now and in the future SI O'Donoghue, AC Gavin, N Gehlenborg, DS Goodsell, JK Hériché, ... Nature methods 7 (3), S2-S4, 2010 | 191 | 2010 |
| Arena3D: visualization of biological networks in 3D GA Pavlopoulos, SI O'Donoghue, VP Satagopam, TG Soldatos, E Pafilis, ... BMC systems biology 2, 1-7, 2008 | 138 | 2008 |
| Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9, 1-15, 2008 | 131 | 2008 |
| High resolution NMR solution structure of the leucine zipper domain of the c-Jun homodimer FK Junius, SI O'Donoghue, M Nilges, AS Weiss, GF King Journal of Biological Chemistry 271 (23), 13663-13667, 1996 | 125 | 1996 |
| Reflect: augmented browsing for the life scientist E Pafilis, S O'Donoghue, L Jensen, H Horn, M Kuhn, N Brown, ... Nature Precedings, 1-1, 2009 | 118 | 2009 |
| Visualization of biomedical data SI O'Donoghue, BF Baldi, SJ Clark, AE Darling, JM Hogan, S Kaur, ... Annual Review of Biomedical Data Science 1 (1), 275-304, 2018 | 100 | 2018 |
| Comprehensive comparison of large-scale tissue expression datasets A Santos, K Tsafou, C Stolte, S Pletscher-Frankild, SI O’Donoghue, ... PeerJ 3, e1054, 2015 | 97 | 2015 |
