Susan Bassham
Susan Bassham
University of Oregon, Institute of Ecology and Evolution
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Cited by
Stacks: an analysis tool set for population genomics
J Catchen, PA Hohenlohe, S Bassham, A Amores, WA Cresko
Molecular ecology 22 (11), 3124-3140, 2013
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
PA Hohenlohe, S Bassham, PD Etter, N Stiffler, EA Johnson, WA Cresko
PLoS genetics 6 (2), e1000862, 2010
SNP discovery and genotyping for evolutionary genetics using RAD sequencing
PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko
Molecular methods for evolutionary genetics, 157-178, 2011
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
PA Hohenlohe, S Bassham, M Currey, WA Cresko
Philosophical Transactions of the Royal Society B: Biological Sciences 367 …, 2012
Local de novo assembly of RAD paired-end contigs using short sequencing reads
PD Etter, JL Preston, S Bassham, WA Cresko, EA Johnson
PloS one 6 (4), e18561, 2011
Evolution of stickleback in 50 years on earthquake-uplifted islands
EA Lescak, SL Bassham, J Catchen, O Gelmond, ML Sherbick, ...
Proceedings of the National Academy of Sciences 112 (52), E7204-E7212, 2015
The population structure and recent colonization history of O regon threespine stickleback determined using restriction‐site associated DNA‐sequencing
J Catchen, S Bassham, T Wilson, M Currey, C O'Brien, Q Yeates, ...
Molecular ecology 22 (11), 2864-2883, 2013
Effects of crossovers between homeologs on inheritance and population genomics in polyploid-derived salmonid fishes
FW Allendorf, S Bassham, WA Cresko, MT Limborg, LW Seeb, JE Seeb
Journal of Heredity 106 (3), 217-227, 2015
The evolutionary history of placodes: a molecular genetic investigation of the larvacean urochordate Oikopleura dioica
S Bassham, JH Postlethwait
Oxford University Press for The Company of Biologists Limited 132 (19), 4259 …, 2005
Development of the central nervous system in the larvacean Oikopleura dioica and the evolution of the chordate brain
C Caņestro, S Bassham, J Postlethwait
Developmental biology 285 (2), 298-315, 2005
The genome of the Gulf pipefish enables understanding of evolutionary innovations
CM Small, S Bassham, J Catchen, A Amores, AM Fuiten, RS Brown, ...
Genome biology 17, 1-23, 2016
Brachyury (T) expression in embryos of a larvacean urochordate, Oikopleura dioica, and the ancestral role of T
S Bassham, J Postlethwait
Developmental biology 220 (2), 322-332, 2000
Repeated selection of alternatively adapted haplotypes creates sweeping genomic remodeling in stickleback
S Bassham, J Catchen, E Lescak, FA von Hippel, WA Cresko
Genetics 209 (3), 921-939, 2018
Seeing chordate evolution through the Cionagenome sequence
C Caņestro, S Bassham, JH Postlethwait
Genome biology 4, 1-5, 2003
Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny
J Catchen, A Amores, S Bassham
G3: Genes, Genomes, Genetics 10 (11), 4115-4128, 2020
Molecular methods for evolutionary genetics
PD Etter, S Bassham, PA Hohenlohe, EA Johnson, WA Cresko, ...
Methods in Molecular Biology 772, 1-19, 2011
Host genotype and microbiota contribute asymmetrically to transcriptional variation in the threespine stickleback gut
CM Small, K Milligan-Myhre, S Bassham, K Guillemin, WA Cresko
Genome biology and evolution 9 (3), 504-520, 2017
Evolution of developmental roles of Pax2/5/8paralogs after independent duplication in urochordate and vertebrate lineages
S Bassham, C Caņestro, JH Postlethwait
BMC biology 6, 1-17, 2008
Evolution of the thyroid: Anterior–posterior regionalization of the Oikopleura endostyle revealed by Otx, Pax2/5/8, and Hox1 expression
C Caņestro, S Bassham, JH Postlethwait
Developmental dynamics: an official publication of the American Association …, 2008
Single-cell Iso-Sequencing enables rapid genome annotation for scRNAseq analysis
HM Healey, S Bassham, WA Cresko
Genetics 220 (3), iyac017, 2022
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