David Studholme
David Studholme
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The Pfam protein families database
A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths‐Jones, ...
Nucleic acids research 32 (suppl_1), D138-D141, 2004
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
BJ Haas, S Kamoun, MC Zody, RHY Jiang, RE Handsaker, LM Cano, ...
Nature 461 (7262), 393-398, 2009
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases 22 (1), 35-42, 2022
InterPro, progress and status in 2005
NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, ...
Nucleic acids research 33 (suppl_1), D201-D205, 2005
Assessing the performance of the oxford nanopore technologies minion
T Laver, J Harrison, PA O’neill, K Moore, A Farbos, K Paszkiewicz, ...
Biomolecular detection and quantification 3, 1-8, 2015
miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
A Molnár, F Schwach, DJ Studholme, EC Thuenemann, DC Baulcombe
Nature 447 (7148), 1126-1129, 2007
The Bacterial Enhancer-Dependent ς54N) Transcription Factor
M Buck, MT Gallegos, DJ Studholme, Y Guo, JD Gralla
Journal of bacteriology 182 (15), 4129-4136, 2000
Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome
L Baxter, S Tripathy, N Ishaque, N Boot, A Cabral, E Kemen, M Thines, ...
science 330 (6010), 1549-1551, 2010
Application of'next-generation'sequencing technologies to microbial genetics
D MacLean, JDG Jones, DJ Studholme
Nature Reviews Microbiology 7 (4), 96-97, 2009
Genome evolution following host jumps in the Irish potato famine pathogen lineage
S Raffaele, RA Farrer, LM Cano, DJ Studholme, D MacLean, M Thines, ...
Science 330 (6010), 1540-1543, 2010
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 2021
Eddy SR The Pfam protein families database
A Bateman, L Coin, R Durbin, RD Finn, V Hollich, S Griffiths-Jones, ...
Nucleic Acids Res 32, D138-D141, 2004
Domain Architectures of σ54-Dependent Transcriptional Activators
DJ Studholme, R Dixon
Journal of bacteriology 185 (6), 1757-1767, 2003
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health 6 (5), e335-e345, 2021
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
RA Mosher, CW Melnyk, KA Kelly, RM Dunn, DJ Studholme, ...
Nature 460 (7252), 283-286, 2009
Genome Sequence of Azotobacter vinelandii, an Obligate Aerobe Specialized To Support Diverse Anaerobic Metabolic Processes
JC Setubal, P Dos Santos, BS Goldman, H Ertesvag, G Espin, LM Rubio, ...
Journal of bacteriology 191 (14), 4534-4545, 2009
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
RA Mosher, F Schwach, D Studholme, DC Baulcombe
Proceedings of the National Academy of Sciences 105 (8), 3145-3150, 2008
A toolkit for analysing large-scale plant small RNA datasets
S Moxon, F Schwach, T Dalmay, D MacLean, DJ Studholme, V Moulton
Bioinformatics 24 (19), 2252-2253, 2008
De novo assembly of short sequence reads
K Paszkiewicz, DJ Studholme
Briefings in bioinformatics 11 (5), 457-472, 2010
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