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Brian Drawert
Brian Drawert
Verified email at unca.edu
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Cited by
Cited by
Year
URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries
B Drawert, S Engblom, A Hellander
BMC systems biology 6 (1), 76, 2012
1832012
The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation
B Drawert, MJ Lawson, L Petzold, M Khammash
The Journal of chemical physics 132 (7), 2010
972010
Stochastic simulation service: bridging the gap between the computational expert and the biologist
B Drawert, A Hellander, B Bales, D Banerjee, G Bellesia, BJ Daigle Jr, ...
PLoS computational biology 12 (12), e1005220, 2016
792016
Spatial stochastic dynamics enable robust cell polarization
MJ Lawson, B Drawert, M Khammash, L Petzold, TM Yi
PLoS computational biology 9 (7), e1003139, 2013
722013
GillesPy: a python package for stochastic model building and simulation
JH Abel, B Drawert, A Hellander, LR Petzold
IEEE life sciences letters 2 (3), 35-38, 2016
612016
Progressive arm muscle weakness in ALS follows the same sequence regardless of onset site: use of TOMS, a novel analytic method to track limb strength
NJ Thakore, BJ Drawert, BR Lapin, EP Pioro
Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration 22 (5-6), 380-387, 2021
412021
Macromolecular crowding regulates the gene expression profile by limiting diffusion
M Golkaram, S Hellander, B Drawert, LR Petzold
PLoS computational biology 12 (11), e1005122, 2016
382016
Molns: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using pyurdme
B Drawert, M Trogdon, S Toor, L Petzold, A Hellander
SIAM Journal on Scientific Computing 38 (3), C179-C202, 2016
352016
Mapscale: a cloud environment for scientific computing
C Bunch, B Drawert, M Norman
University of California, Computer Science Department, Tech. Rep, 2009
322009
Local error estimates for adaptive simulation of the reaction–diffusion master equation via operator splitting
A Hellander, MJ Lawson, B Drawert, L Petzold
Journal of computational physics 266, 89-100, 2014
272014
The effect of cell geometry on polarization in budding yeast
M Trogdon, B Drawert, C Gomez, SP Banavar, TM Yi, O Campàs, ...
PLoS computational biology 14 (6), e1006241, 2018
232018
A framework for discrete stochastic simulation on 3D moving boundary domains
B Drawert, S Hellander, M Trogdon, TM Yi, L Petzold
The Journal of chemical physics 145 (18), 2016
202016
An arbitrary Lagrangian Eulerian smoothed particle hydrodynamics (ALE-SPH) method with a boundary volume fraction formulation for fluid-structure interaction
B Jacob, B Drawert, TM Yi, L Petzold
Engineering analysis with boundary elements 128, 274-289, 2021
192021
A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection–diffusion–reaction problems
B Drawert, B Jacob, Z Li, TM Yi, L Petzold
Journal of computational physics 378, 1-17, 2019
192019
Using stochastic epidemiological models to evaluate conservation strategies for endangered amphibians
B Drawert, M Griesemer, LR Petzold, CJ Briggs
Journal of the Royal Society Interface 14 (133), 20170480, 2017
192017
Language and runtime support for automatic configuration and deployment of scientific computing software over cloud fabrics
C Bunch, B Drawert, N Chohan, C Krintz, L Petzold, K Shams
Journal of Grid Computing 10, 23-46, 2012
192012
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
172022
Coordinating cell polarization and morphogenesis through mechanical feedback
SP Banavar, M Trogdon, B Drawert, TM Yi, LR Petzold, O Campàs
PLoS computational biology 17 (1), e1007971, 2021
162021
Reducing complexity in management of escience computations
PO Östberg, A Hellander, B Drawert, E Elmroth, S Holmgren, L Petzold
2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2012
142012
URDME 1.1: User’s manual
B Drawert, S Engblom, A Hellander
ArXiv e-prints, 2011
112011
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Articles 1–20