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Adam English
Adam English
Spiral Genetics
Verified email at spiralgenetics.com
Title
Cited by
Cited by
Year
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology
AC English, S Richards, Y Han, M Wang, V Vee, J Qu, X Qin, DM Muzny, ...
PloS one 7 (11), e47768, 2012
10512012
The somatic genomic landscape of chromophobe renal cell carcinoma
CF Davis, CJ Ricketts, M Wang, L Yang, AD Cherniack, H Shen, C Buhay, ...
Cancer cell 26 (3), 319-330, 2014
8522014
Finding the missing honey bee genes: lessons learned from a genome upgrade
CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ...
BMC genomics 15, 1-29, 2014
4412014
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
3202020
Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline
JG Reid, A Carroll, N Veeraraghavan, M Dahdouli, A Sundquist, A English, ...
BMC bioinformatics 15, 1-11, 2014
2582014
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
AA Regier, Y Farjoun, DE Larson, O Krasheninina, HM Kang, ...
Nature communications 9 (1), 4038, 2018
2112018
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
AC English, WJ Salerno, JG Reid
BMC bioinformatics 15, 1-7, 2014
1782014
Assessing structural variation in a personal genome—towards a human reference diploid genome
AC English, WJ Salerno, OA Hampton, C Gonzaga-Jauregui, S Ambreth, ...
BMC genomics 16, 1-15, 2015
1602015
Truvari: refined structural variant comparison preserves allelic diversity
AC English, VK Menon, RA Gibbs, GA Metcalf, FJ Sedlazeck
Genome Biology 23 (1), 271, 2022
1142022
Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host
D Palesch, SE Bosinger, GK Tharp, TH Vanderford, M Paiardini, ...
Nature 553 (7686), 77-81, 2018
842018
PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations
M Wang, CR Beck, AC English, Q Meng, C Buhay, Y Han, ...
BMC genomics 16, 1-12, 2015
832015
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community
S Saha, PS Hosmani, K Villalobos-Ayala, S Miller, T Shippy, M Flores, ...
Database 2017, bax032, 2017
752017
Megabase length hypermutation accompanies human structural variation at 17p11. 2
CR Beck, CMB Carvalho, ZC Akdemir, FJ Sedlazeck, X Song, Q Meng, ...
Cell 176 (6), 1310-1324. e10, 2019
692019
A robust benchmark for germline structural variant detection
JM Zook, NF Hansen, ND Olson, LM Chapman, JC Mullikin, C Xiao, ...
BioRxiv, 664623, 2019
672019
Characterization and visualization of tandem repeats at genome scale
E Dolzhenko, A English, H Dashnow, G De Sena Brandine, T Mokveld, ...
Nature Biotechnology, 1-9, 2024
49*2024
A rare missense variant of CASP7 is associated with familial late-onset Alzheimer's disease
X Zhang, C Zhu, G Beecham, BN Vardarajan, Y Ma, D Lancour, JJ Farrell, ...
Alzheimer's & Dementia 15 (3), 441-452, 2019
432019
Prevalence of alternative splicing choices in Arabidopsis thaliana
AC English, KS Patel, AE Loraine
BMC plant biology 10, 1-17, 2010
432010
xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments
J Farek, D Hughes, W Salerno, Y Zhu, A Pisupati, A Mansfield, ...
GigaScience 12, giac125, 2023
342023
Analysis and benchmarking of small and large genomic variants across tandem repeats
AC English, E Dolzhenko, H Ziaei Jam, SK McKenzie, ND Olson, ...
Nature Biotechnology, 1-12, 2024
27*2024
Human genome meeting 2016: Houston, TX, USA. 28 February-2 March 2016
AK Srivastava, Y Wang, R Huang, C Skinner, T Thompson, L Pollard, ...
Human genomics 10, 1-40, 2016
232016
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