Vassily Hatzimanikatis
Vassily Hatzimanikatis
Associate Professor, EPFL
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A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
Thermodynamics-based metabolic flux analysis
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 92 (5), 1792-1805, 2007
Group contribution method for thermodynamic analysis of complex metabolic networks
MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 95 (3), 1487-1499, 2008
Exploring the diversity of complex metabolic networks
V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt
Bioinformatics 21 (8), 1603-1609, 2005
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
Metabolic flux analysis of hybridoma cells in different culture media using mass balances
HPJ Bonarius, V Hatzimanikatis, KPH Meesters, CD De Gooijer, ...
Biotechnology and Bioengineering 50 (3), 299-318, 1996
Kinetic models in industrial biotechnology–improving cell factory performance
J Almquist, M Cvijovic, V Hatzimanikatis, J Nielsen, M Jirstrand
Metabolic engineering 24, 38-60, 2014
Metabolic fluxes in riboflavin-producing Bacillus subtilis
U Sauer, V Hatzimanikatis, JE Bailey, M Hochuli, T Szyperski, K WŁthrich
Nature biotechnology 15 (5), 448-452, 1997
Genome-scale thermodynamic analysis of Escherichia coli metabolism
CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 90 (4), 1453-1461, 2006
Inverse metabolic engineering: a strategy for directed genetic engineering of useful phenotypes
JE Bailey, A Sburlati, V Hatzimanikatis, K Lee, WA Renner, PS Tsai
Biotechnology and Bioengineering 52 (1), 109-121, 1996
Physiology and metabolic fluxes of wild-type and riboflavin-producing Bacillus subtilis
U Sauer, V Hatzimanikatis, HP Hohmann, M Manneberg, AP Van Loon, ...
Applied and environmental microbiology 62 (10), 3687-3696, 1996
Production of lactate using crabtree negative organisms in varying culture conditions
V Rajgarhia, V Hatzimanikatis, S Olson, T Carlson, JN Starr, JJ Kolstad, ...
US Patent 6,485,947, 2002
Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biotechnology and bioengineering 106 (3), 462-473, 2010
Metabolic control analysis under uncertainty: framework development and case studies
L Wang, I Birol, V Hatzimanikatis
Biophysical journal 87 (6), 3750-3763, 2004
Analysis and design of metabolic reaction networks via mixed‐integer linear optimization
V Hatzimanikatis, CA Floudas, JE Bailey
AIChE Journal 42 (5), 1277-1292, 1996
Towards kinetic modeling of genome‐scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints
A Chakrabarti, L Miskovic, KC Soh, V Hatzimanikatis
Biotechnology journal 8 (9), 1043-1057, 2013
ATLAS of biochemistry: a repository of all possible biochemical reactions for synthetic biology and metabolic engineering studies
N Hadadi, J Hafner, A Shajkofci, A Zisaki, V Hatzimanikatis
ACS synthetic biology 5 (10), 1155-1166, 2016
Dynamical analysis of gene networks requires both mRNA and protein expression information
V Hatzimanikatis, KH Lee
Metabolic engineering 1 (4), 275-281, 1999
Insights into the relation between mRNA and protein expression patterns: I. Theoretical considerations
A Mehra, KH Lee, V Hatzimanikatis
Biotechnology and bioengineering 84 (7), 822-833, 2003
Manipulating redox and ATP balancing for improved production of succinate in E. coli
A Singh, KC Soh, V Hatzimanikatis, RT Gill
Metabolic engineering 13 (1), 76-81, 2011
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