Eric Bonnet
Eric Bonnet
Computational biologist and team leader, Centre National de Recherche en Génomique Humaine (CNRGH)
Verified email at - Homepage
Cited by
Cited by
The genome of Tetranychus urticae reveals herbivorous pest adaptations
M Grbić, T Van Leeuwen, RM Clark, S Rombauts, P Rouzé, V Grbić, ...
Nature 479 (7374), 487-492, 2011
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
JM Cock, L Sterck, P Rouzé, D Scornet, AE Allen, G Amoutzias, ...
Nature 465 (7298), 617-621, 2010
zt: A sofware tool for simple and partial mantel tests
E Bonnet, Y Van de Peer
Journal of Statistical software 7, 1-12, 2002
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
E Bonnet, J Wuyts, P Rouzé, Y Van de Peer
Bioinformatics 20 (17), 2911-2917, 2004
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
E Bonnet, J Wuyts, P Rouzé, Y Van de Peer
Proceedings of the National Academy of Sciences 101 (31), 11511-11516, 2004
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
E Bonnet, Y He, K Billiau, Y Van de Peer
Bioinformatics 26 (12), 1566-1568, 2010
A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana
J Van Leene, H Stals, D Eeckhout, G Persiau, E Van De Slijke, ...
Molecular & Cellular Proteomics 6 (7), 1226-1238, 2007
Generic eukaryotic core promoter prediction using structural features of DNA
T Abeel, Y Saeys, E Bonnet, P Rouzé, Y Van de Peer
Genome research 18 (2), 310-323, 2008
The small RNA world of plants
E Bonnet, Y Van de Peer, P Rouzé
New Phytologist 171 (3), 451-468, 2006
Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps
I Kuperstein, E Bonnet, HA Nguyen, D Cohen, E Viara, L Grieco, ...
Oncogenesis 4 (7), e160-e160, 2015
Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer
AA Margolin, E Bilal, E Huang, TC Norman, L Ottestad, BH Mecham, ...
Science translational medicine 5 (181), 181re1-181re1, 2013
Integrative multi-omics module network inference with Lemon-Tree
E Bonnet, L Calzone, T Michoel
PLoS computational biology 11 (2), e1003983, 2015
Module network inference from a cancer gene expression data set identifies microRNA regulated modules
E Bonnet, M Tatari, A Joshi, T Michoel, K Marchal, G Berx, Y Van de Peer
PloS one 5 (4), e10162, 2010
BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats
E Bonnet, L Calzone, D Rovera, G Stoll, E Barillot, A Zinovyev
BMC Systems Biology 7 (1), 18, 2013
Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples
E Bonnet, ML Moutet, C Baulard, D Bacq-Daian, F Sandron, L Mesrob, ...
PloS one 13 (4), e0195471, 2018
ROMA: representation and quantification of module activity from target expression data
L Martignetti, L Calzone, E Bonnet, E Barillot, A Zinovyev
Frontiers in genetics 7, 18, 2016
Validating module network learning algorithms using simulated data
T Michoel, S Maere, E Bonnet, A Joshi, Y Saeys, T Van den Bulcke, ...
BMC bioinformatics 8, 1-15, 2007
Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data
E Bonnet, T Michoel, Y Van de Peer
Bioinformatics 26 (18), i638-i644, 2010
Whole-genome bisulfite sequencing for the analysis of genome-wide DNA methylation and hydroxymethylation patterns at single-nucleotide resolution
M Kernaleguen, C Daviaud, Y Shen, E Bonnet, V Renault, JF Deleuze, ...
Epigenome Editing: Methods and Protocols, 311-349, 2018
Decision making for food choice by grasshoppers (Orthoptera: Acrididae): comparison between a specialist species on a shrubby legume and three graminivorous species
F Picaud, E Bonnet, V Gloaguen, D Petit
Environmental entomology 32 (3), 680-688, 2003
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