Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 15548 | 2019 |
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ... Nature biotechnology 34 (8), 828-837, 2016 | 3542 | 2016 |
Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature PG Arnison, MJ Bibb, G Bierbaum, AA Bowers, TS Bugni, G Bulaj, ... Natural product reports 30 (1), 108-160, 2013 | 2124 | 2013 |
Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1570 | 2018 |
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ... Nature methods 16 (4), 299-302, 2019 | 1165 | 2019 |
Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis T Nakatsuji, TH Chen, S Narala, KA Chun, AM Two, T Yun, F Shafiq, ... Science translational medicine 9 (378), eaah4680, 2017 | 1093 | 2017 |
Mass spectral molecular networking of living microbial colonies J Watrous, P Roach, T Alexandrov, BS Heath, JY Yang, RD Kersten, ... Proceedings of the National Academy of Sciences 109 (26), E1743-E1752, 2012 | 1020 | 2012 |
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 983 | 2018 |
Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 963 | 2020 |
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015 | 902 | 2015 |
Microbiome-wide association studies link dynamic microbial consortia to disease JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ... Nature 535 (7610), 94-103, 2016 | 761 | 2016 |
American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 706 | 2018 |
ncRNA-and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs L Yang, C Lin, W Liu, J Zhang, KA Ohgi, JD Grinstein, PC Dorrestein, ... Cell 147 (4), 773-788, 2011 | 702 | 2011 |
Molecular networking as a dereplication strategy JY Yang, LM Sanchez, CM Rath, X Liu, PD Boudreau, N Bruns, E Glukhov, ... Journal of natural products 76 (9), 1686-1699, 2013 | 672 | 2013 |
Specialized metabolites from the microbiome in health and disease G Sharon, N Garg, J Debelius, R Knight, PC Dorrestein, SK Mazmanian Cell metabolism 20 (5), 719-730, 2014 | 610 | 2014 |
Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 573 | 2018 |
Illuminating the dark matter in metabolomics RR da Silva, PC Dorrestein, RA Quinn Proceedings of the National Academy of Sciences 112 (41), 12549-12550, 2015 | 516 | 2015 |
Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity S Shalapour, XJ Lin, IN Bastian, J Brain, AD Burt, AA Aksenov, ... Nature 551 (7680), 340-345, 2017 | 511 | 2017 |
Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A K Yamanaka, KA Reynolds, RD Kersten, KS Ryan, DJ Gonzalez, V Nizet, ... Proceedings of the National Academy of Sciences 111 (5), 1957-1962, 2014 | 510 | 2014 |
Reproducible molecular networking of untargeted mass spectrometry data using GNPS AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ... Nature protocols 15 (6), 1954-1991, 2020 | 489 | 2020 |