| IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets C Bertelli, MR Laird, KP Williams, ... Nucleic acids research 45 (W1), W30-W35, 2017 | 1218* | 2017 |
| EDGAR 2.0: an enhanced software platform for comparative gene content analyses J Blom, J Kreis, S Spänig, T Juhre, C Bertelli, C Ernst, A Goesmann Nucleic acids research 44 (W1), W22-W28, 2016 | 373 | 2016 |
| Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ... Genome biology 14, 1-15, 2013 | 329 | 2013 |
| Rapid bacterial genome sequencing: methods and applications in clinical microbiology C Bertelli, G Greub Clinical Microbiology and Infection 19 (9), 803-813, 2013 | 271 | 2013 |
| Lausannevirus, a giant amoebal virus encoding histone doublets V Thomas, C Bertelli, F Collyn, N Casson, A Telenti, A Goesmann, ... Environmental microbiology 13 (6), 1454-1466, 2011 | 166 | 2011 |
| Bifidobacterium longum Bacteremia in Preterm Infants Receiving Probiotics C Bertelli, T Pillonel, A Torregrossa, G Prod'hom, CJ Fischer, G Greub, ... Clinical Infectious Diseases 60 (6), 924-927, 2015 | 161 | 2015 |
| Genotypes Associated with Listeria monocytogenes Isolates Displaying Impaired or Enhanced Tolerances to Cold, Salt, Acid, or Desiccation Stress P Hingston, J Chen, BK Dhillon, C Laing, C Bertelli, V Gannon, T Tasara, ... Frontiers in microbiology 8, 369, 2017 | 143 | 2017 |
| The Waddlia Genome: A Window into Chlamydial Biology C Bertelli, F Collyn, A Croxatto, C Rückert, A Polkinghorne, ... PloS one 5 (5), e10890, 2010 | 122 | 2010 |
| Improved genomic island predictions with IslandPath-DIMOB C Bertelli, FSL Brinkman Bioinformatics 1, 7, 2018 | 119 | 2018 |
| Reduced chlorine in drinking water distribution systems impacts bacterial biodiversity in biofilms C Bertelli, S Courtois, M Rosikiewicz, P Piriou, S Aeby, S Robert, JF Loret, ... Frontiers in microbiology 9, 2520, 2018 | 94 | 2018 |
| Microbial genomic island discovery, visualization and analysis C Bertelli, KE Tilley, FSL Brinkman Briefings in bioinformatics 20 (5), 1685-1698, 2019 | 87 | 2019 |
| Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools L Freschi, C Bertelli, J Jeukens, MP Moore, I Kukavica-Ibrulj, ... FEMS microbiology letters 365 (14), fny120, 2018 | 74 | 2018 |
| Taxogenomics of the order Chlamydiales T Pillonel, C Bertelli, N Salamin, G Greub International journal of systematic and evolutionary microbiology 65 (Pt_4 …, 2015 | 74 | 2015 |
| High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach G Greub, C Kebbi-Beghdadi, C Bertelli, F Collyn, BM Riederer, C Yersin, ... PloS one 4 (12), e8423, 2009 | 74 | 2009 |
| Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms C Bertelli, G Greub Frontiers in cellular and infection microbiology 2, 110, 2012 | 73 | 2012 |
| Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds R Miyazaki, C Bertelli, P Benaglio, J Canton, N De Coi, WH Gharib, ... Environmental Microbiology 17 (1), 91-104, 2015 | 63 | 2015 |
| Insight into cross-talk between intra-amoebal pathogens G Gimenez, C Bertelli, C Moliner, C Robert, D Raoult, PE Fournier, ... BMC genomics 12, 1-14, 2011 | 55 | 2011 |
| RNA pentaloop structures as effective targets of regulators belonging to the RsmA/CsrA protein family K Lapouge, R Perozzo, J Iwaszkiewicz, C Bertelli, V Zoete, O Michielin, ... RNA biology 10 (6), 1030-1041, 2013 | 53 | 2013 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum NL Bachmann, TA Fraser, C Bertelli, M Jelocnik, A Gillett, O Funnell, ... BMC genomics 15, 1-14, 2014 | 49 | 2014 |
