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A.R. Raphenya
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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
23332020
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ...
Nucleic acids research, gkw1004, 2016
20742016
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ...
Nucleic acids research 51 (D1), D690-D699, 2023
2222023
Metformin-induced increases in GDF15 are important for suppressing appetite and promoting weight loss
EA Day, RJ Ford, BK Smith, P Mohammadi-Shemirani, MR Morrow, ...
Nature Metabolism 1 (12), 1202-1208, 2019
1992019
Isolation, sequence, infectivity, and replication kinetics of severe acute respiratory syndrome coronavirus 2
A Banerjee, JA Nasir, P Budylowski, L Yip, P Aftanas, N Christie, ...
Emerging infectious diseases 26 (9), 2054, 2020
1282020
Failed recovery of glycemic control and myofibrillar protein synthesis with 2 wk of physical inactivity in overweight, prediabetic older adults
C McGlory, MT von Allmen, T Stokes, RW Morton, AJ Hector, BA Lago, ...
The Journals of Gerontology: Series A 73 (8), 1070-1077, 2018
992018
A comparison of whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture
JA Nasir, RA Kozak, P Aftanas, AR Raphenya, KM Smith, F Maguire, ...
Viruses 12 (8), 895, 2020
922020
Capturing the resistome: a targeted capture method to reveal antibiotic resistance determinants in metagenomes
AK Guitor, AR Raphenya, J Klunk, M Kuch, B Alcock, MG Surette, ...
Antimicrobial agents and chemotherapy 64 (1), 10.1128/aac. 01324-19, 2019
742019
The pesticide chlorpyrifos promotes obesity by inhibiting diet-induced thermogenesis in brown adipose tissue
B Wang, EE Tsakiridis, S Zhang, A Llanos, EM Desjardins, JM Yabut, ...
Nature communications 12 (1), 1-12, 2021
572021
The transcription factor, Nuclear factor, erythroid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development
LM Williams, BA Lago, AG McArthur, AR Raphenya, N Pray, N Saleem, ...
Aquatic toxicology 180, 141-154, 2016
312016
The origins and genomic diversity of American Civil War Era smallpox vaccine strains
AT Duggan, J Klunk, AF Porter, AN Dhody, R Hicks, GL Smith, ...
Genome biology 21 (1), 1-11, 2020
262020
Metformin-induced reductions in tumor growth involves modulation of the gut microbiome
LA Broadfield, A Saigal, JC Szamosi, JA Hammill, K Bezverbnaya, ...
Molecular Metabolism 61, 101498, 2022
222022
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package
EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ...
Gigascience 11, giac003, 2022
202022
Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks
C Bertelli, KL Gray, N Woods, AC Lim, KE Tilley, GL Winsor, GR Hoad, ...
Microbial genomics 8 (5), 2022
172022
Capturing the antibiotic resistome of preterm infants reveals new benefits of probiotic supplementation
AK Guitor, EI Yousuf, AR Raphenya, EK Hutton, KM Morrison, ...
Microbiome 10 (1), 1-16, 2022
162022
Genetic population structure of the round whitefish (Prosopium cylindraceum) in North America: multiple markers reveal glacial refugia and regional subdivision
TD Morgan, CF Graham, AG McArthur, AR Raphenya, DR Boreham, ...
Canadian Journal of Fisheries and Aquatic Sciences 75 (6), 836-849, 2018
142018
The PHA4GE SARS-CoV-2 contextual data specification for open genomic epidemiology
EJ Griffiths, RE Timme, AJ Page, NF Alikhan, D Fornika, F Maguire, ...
MDPI AG, 2020
132020
Functional relatedness in the Inv/Mxi‐Spa type III secretion system family
JA Klein, BM Dave, AR Raphenya, AG McArthur, LA Knodler
Molecular microbiology 103 (6), 973-991, 2017
112017
Exploring the mobilome and resistome of Enterococcus faecium in a One Health context across two continents
H Sanderson, KL Gray, A Manuele, F Maguire, A Khan, C Liu, ...
Microbial genomics 8 (9), 000880, 2022
102022
Genotyping SARS-CoV-2 through an interactive web application
H Maan, H Mbareche, AR Raphenya, A Banerjee, JA Nasir, RA Kozak, ...
The Lancet Digital Health 2 (7), e340-e341, 2020
102020
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Articles 1–20