Shanker Kalyana-Sundaram
Shanker Kalyana-Sundaram
GlaxoSmithKline, Collegeville
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ONCOMINE: a cancer microarray database and integrated data-mining platform
DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, ...
Neoplasia 6 (1), 1-6, 2004
Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression
A Sreekumar, LM Poisson, TM Rajendiran, AP Khan, Q Cao, J Yu, ...
Nature 457 (7231), 910-914, 2009
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
DR Rhodes, S Kalyana-Sundaram, V Mahavisno, R Varambally, J Yu, ...
Neoplasia 9 (2), 166-180, 2007
Development of human protein reference database as an initial platform for approaching systems biology in humans
S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ...
Genome research 13 (10), 2363-2371, 2003
Activating ESR1 mutations in hormone-resistant metastatic breast cancer
DR Robinson, YM Wu, P Vats, F Su, RJ Lonigro, X Cao, ...
Nature genetics 45 (12), 1446-1451, 2013
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, ...
Proceedings of the National Academy of Sciences 101 (25), 9309-9314, 2004
Transcriptome sequencing to detect gene fusions in cancer
CA Maher, C Kumar-Sinha, X Cao, S Kalyana-Sundaram, B Han, X Jing, ...
Nature 458 (7234), 97-101, 2009
Integrative molecular concept modeling of prostate cancer progression
SA Tomlins, R Mehra, DR Rhodes, X Cao, L Wang, SM Dhanasekaran, ...
Nature genetics 39 (1), 41-51, 2007
Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing
DR Robinson, YM Wu, S Kalyana-Sundaram, X Cao, RJ Lonigro, ...
Nature genetics 45 (2), 180-185, 2013
Identification of targetable FGFR gene fusions in diverse cancers
YM Wu, F Su, S Kalyana-Sundaram, N Khazanov, B Ateeq, X Cao, ...
Cancer discovery 3 (6), 636-647, 2013
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ...
Nature biotechnology 22 (2), 177-183, 2004
Human protein reference database as a discovery resource for proteomics
S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ...
Nucleic acids research 32 (suppl_1), D497-D501, 2004
Personalized oncology through integrative high-throughput sequencing: a pilot study
S Roychowdhury, MK Iyer, DR Robinson, RJ Lonigro, YM Wu, X Cao, ...
Science translational medicine 3 (111), 111ra121-111ra121, 2011
Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma
N Palanisamy, B Ateeq, S Kalyana-Sundaram, D Pflueger, ...
Nature medicine 16 (7), 793-798, 2010
Probabilistic model of the human protein-protein interaction network
DR Rhodes, SA Tomlins, S Varambally, V Mahavisno, T Barrette, ...
Nature biotechnology 23 (8), 951-959, 2005
Chimeric transcript discovery by paired-end transcriptome sequencing
CA Maher, N Palanisamy, JC Brenner, X Cao, S Kalyana-Sundaram, ...
Proceedings of the National Academy of Sciences 106 (30), 12353-12358, 2009
Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer
DR Robinson, S Kalyana-Sundaram, YM Wu, S Shankar, X Cao, B Ateeq, ...
Nature medicine 17 (12), 1646-1651, 2011
Expressed pseudogenes in the transcriptional landscape of human cancers
S Kalyana-Sundaram, C Kumar-Sinha, S Shankar, DR Robinson, YM Wu, ...
Cell 149 (7), 1622-1634, 2012
Mining for regulatory programs in the cancer transcriptome
DR Rhodes, S Kalyana-Sundaram, V Mahavisno, TR Barrette, D Ghosh, ...
Nature genetics 37 (6), 579-583, 2005
Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer
JH Kim, SM Dhanasekaran, JR Prensner, X Cao, D Robinson, ...
Genome research 21 (7), 1028-1041, 2011
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