James DR Knight
James DR Knight
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High-density proximity mapping reveals the subcellular organization of mRNA-associated granules and bodies
JY Youn, WH Dunham, SJ Hong, JDR Knight, M Bashkurov, GI Chen, ...
Molecular cell 69 (3), 517-532. e11, 2018
A dynamic protein interaction landscape of the human centrosome-cilium interface
GD Gupta, É Coyaud, J Gonçalves, BA Mojarad, Y Liu, Q Wu, ...
Cell 163 (6), 1484-1499, 2015
Protein interaction network of the mammalian Hippo pathway reveals mechanisms of kinase-phosphatase interactions
AL Couzens, JDR Knight, MJ Kean, G Teo, A Weiss, WH Dunham, ZY Lin, ...
Science signaling 6 (302), rs15-rs15, 2013
A proximity-dependent biotinylation map of a human cell
CD Go, JDR Knight, A Rajasekharan, B Rathod, GG Hesketh, KT Abe, ...
Nature 595 (7865), 120-124, 2021
Properties of Stress Granule and P-Body Proteomes
JY Youn, BJA Dyakov, J Zhang, JDR Knight, RM Vernon, JD Forman-Kay, ...
Molecular Cell 76 (2), 286-294, 2019
Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes
JP Lambert, M Tucholska, C Go, JDR Knight, AC Gingras
Journal of proteomics 118, 81-94, 2015
The myogenic kinome: protein kinases critical to mammalian skeletal myogenesis
JDR Knight, R Kothary
Skeletal muscle 1, 1-18, 2011
ProHits-viz: a suite of web tools for visualizing interaction proteomics data
JDR Knight, H Choi, GD Gupta, L Pelletier, B Raught, AI Nesvizhskii, ...
Nature methods 14 (7), 645-646, 2017
Interactome Rewiring Following Pharmacological Targeting of BET Bromodomains
JP Lambert, S Picaud, T Fujisawa, H Hou, P Savitsky, L Uusküla-Reimand, ...
Molecular cell 73 (3), 621-638. e17, 2019
MSPLIT-DIA: sensitive peptide identification for data-independent acquisition
J Wang, M Tucholska, JDR Knight, JP Lambert, S Tate, B Larsen, ...
Nature methods 12 (12), 1106-1108, 2015
Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators
N St-Denis, GD Gupta, ZY Lin, B Gonzalez-Badillo, AO Veri, JDR Knight, ...
Cell Reports 17 (9), 2488-2501, 2016
CCM-3/STRIPAK promotes seamless tube extension through endocytic recycling
B Lant, B Yu, M Goudreault, D Holmyard, JDR Knight, P Xu, L Zhao, ...
Nature communications 6 (1), 6449, 2015
A SARS-CoV-2–host proximity interactome
P Samavarchi-Tehrani, H Abdouni, JDR Knight, A Astori, R Samson, ...
BioRxiv, 2020.09. 03.282103, 2020
Biochemical, proteomic, structural, and thermodynamic characterizations of integrin-linked kinase (ILK) CROSS-VALIDATION OF THE PSEUDOKINASE
K Fukuda, JDR Knight, G Piszczek, R Kothary, J Qin
Journal of Biological Chemistry 286 (24), 21886-21895, 2011
Data Independent Acquisition analysis in ProHits 4.0
G Liu, JDR Knight, JP Zhang, CC Tsou, J Wang, JP Lambert, B Larsen, ...
Journal of proteomics 149, 64-68, 2016
Conservation, variability and the modeling of active protein kinases
JDR Knight, B Qian, D Baker, R Kothary
PLoS One 2 (10), e982, 2007
The GATOR–Rag GTPase pathway inhibits mTORC1 activation by lysosome-derived amino acids
GG Hesketh, F Papazotos, J Pawling, D Rajendran, JDR Knight, ...
Science 370 (6514), 351-356, 2020
The role of conserved water molecules in the catalytic domain of protein kinases
JDR Knight, D Hamelberg, JA McCammon, R Kothary
Proteins: Structure, Function, and Bioinformatics 76 (3), 527-535, 2009
A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts
JDR Knight, R Tian, REC Lee, F Wang, A Beauvais, H Zou, LA Megeney, ...
Skeletal muscle 2 (1), 1-12, 2012
Heart of glass anchors Rasip1 at endothelial cell-cell junctions to support vascular integrity
BJ de Kreuk, AR Gingras, JDR Knight, JJ Liu, AC Gingras, MH Ginsberg
Elife 5, e11394, 2016
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