Orin Shanks
Orin Shanks
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Community structures of fecal bacteria in cattle from different animal feeding operations
OC Shanks, CA Kelty, S Archibeque, M Jenkins, RJ Newton, SL McLellan, ...
Applied and environmental microbiology 77 (9), 2992-3001, 2011
Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study
AB Boehm, LC Van De Werfhorst, JF Griffith, PA Holden, JA Jay, ...
Water research 47 (18), 6812-6828, 2013
Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples
HC Green, RA Haugland, M Varma, HT Millen, MA Borchardt, KG Field, ...
Applied and environmental microbiology 80 (10), 3086-3094, 2014
Quantitative CrAssphage PCR assays for human fecal pollution measurement
E Stachler, C Kelty, M Sivaganesan, X Li, K Bibby, OC Shanks
Environmental science & technology 51 (16), 9146-9154, 2017
Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR
RA Haugland, M Varma, M Sivaganesan, C Kelty, L Peed, OC Shanks
Systematic and applied microbiology 33 (6), 348-357, 2010
Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution
OC Shanks, E Atikovic, AD Blackwood, J Lu, RT Noble, JS Domingo, ...
Applied and environmental microbiology 74 (3), 745-752, 2008
Quantitative PCR for genetic markers of human fecal pollution
OC Shanks, CA Kelty, M Sivaganesan, M Varma, RA Haugland
Applied and environmental microbiology 75 (17), 5507-5513, 2009
Animal DNA in PCR reagents plagues ancient DNA research
JA Leonard, O Shanks, M Hofreiter, E Kreuz, L Hodges, W Ream, ...
Journal of Archaeological Science 34 (9), 1361-1366, 2007
Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance
W Ahmed, SL Simpson, PM Bertsch, K Bibby, A Bivins, LL Blackall, ...
Science of the Total Environment 805, 149877, 2022
Comparison of the microbial community structures of untreated wastewaters from different geographic locales
OC Shanks, RJ Newton, CA Kelty, SM Huse, ML Sogin, SL McLellan
Applied and environmental microbiology 79 (9), 2906-2913, 2013
Performance of PCR-Based Assays Targeting Bacteroidales Genetic Markers of Human Fecal Pollution in Sewage and Fecal Samples
OC Shanks, K White, CA Kelty, M Sivaganesan, J Blannon, M Meckes, ...
Environmental science & technology 44 (16), 6281-6288, 2010
Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study
BA Layton, Y Cao, DL Ebentier, K Hanley, E Balleste, J Brandão, ...
Water Research 47 (18), 6897-6908, 2013
Differential decay of human faecal Bacteroides in marine and freshwater
HC Green, OC Shanks, M Sivaganesan, RA Haugland, KG Field
Environmental microbiology 13 (12), 3235-3249, 2011
Sewage reflects the distribution of human faecal Lachnospiraceae
SL McLellan, RJ Newton, JL Vandewalle, OC Shanks, SM Huse, AM Eren, ...
Environmental microbiology 15 (8), 2213-2227, 2013
Basin-wide analysis of the dynamics of fecal contamination and fecal source identification in Tillamook Bay, Oregon
OC Shanks, C Nietch, M Simonich, M Younger, D Reynolds, KG Field
Applied and Environmental Microbiology 72 (8), 5537-5546, 2006
Dramatic improvements in beach water quality following gull removal
RR Converse, JL Kinzelman, EA Sams, E Hudgens, AP Dufour, H Ryu, ...
Environmental science & technology 46 (18), 10206-10213, 2012
Human-associated fecal quantitative polymerase chain reaction measurements and simulated risk of gastrointestinal illness in recreational waters contaminated with raw sewage
AB Boehm, JA Soller, OC Shanks
Environmental Science & Technology Letters 2 (10), 270-275, 2015
Decay of bacterial pathogens, fecal indicators, and real-time quantitative PCR genetic markers in manure-amended soils
SW Rogers, M Donnelly, L Peed, CA Kelty, S Mondal, Z Zhong, ...
Applied and Environmental Microbiology 77 (14), 4839-4848, 2011
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples
OC Shanks, JW Santo Domingo, R Lamendella, CA Kelty, JE Graham
Applied and environmental microbiology 72 (6), 4054-4060, 2006
Identification of chicken-specific fecal microbial sequences using a metagenomic approach
J Lu, J Santo Domingo, OC Shanks
Water research 41 (16), 3561-3574, 2007
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