|Deep multilayer brain proteomics identifies molecular networks in Alzheimer’s disease progression|
B Bai, X Wang, Y Li, PC Chen, K Yu, KK Dey, JM Yarbro, X Han, BM Lutz, ...
Neuron 105 (6), 975-991. e7, 2020
|Efficacy of retinoids in IKZF1-mutated BCR-ABL1 acute lymphoblastic leukemia|
ML Churchman, J Low, C Qu, EM Paietta, LH Kasper, Y Chang, ...
Cancer cell 28 (3), 343-356, 2015
|Identification of a multifunctional binding site on Ubc9p required for Smt3p conjugation|
KP Bencsath, MS Podgorski, VR Pagala, CA Slaughter, BA Schulman
Journal of Biological Chemistry 277 (49), 47938-47945, 2002
|Exercise protects against MPTP-induced neurotoxicity in mice|
KM Gerecke, Y Jiao, A Pani, V Pagala, RJ Smeyne
Brain research 1341, 72-83, 2010
|CENP-A K124 ubiquitylation is required for CENP-A deposition at the centromere|
Y Niikura, R Kitagawa, H Ogi, R Abdulle, V Pagala, K Kitagawa
Developmental cell 32 (5), 589-603, 2015
|Deep profiling of proteome and phosphoproteome by isobaric labeling, extensive liquid chromatography, and mass spectrometry|
B Bai, H Tan, VR Pagala, AA High, VP Ichhaporia, L Hendershot, J Peng
Methods in enzymology 585, 377-395, 2017
|Blocking an N-terminal acetylation–dependent protein interaction inhibits an E3 ligase|
DC Scott, JT Hammill, J Min, DY Rhee, M Connelly, VO Sviderskiy, ...
Nature chemical biology 13 (8), 850-857, 2017
|Proteomic studies of the intrinsically unstructured mammalian proteome|
CA Galea, VR Pagala, JC Obenauer, CG Park, CA Slaughter, ...
Journal of proteome research 5 (10), 2839-2848, 2006
|Extensive Peptide Fractionation and y1 Ion-Based Interference Detection Method for Enabling Accurate Quantification by Isobaric Labeling and Mass Spectrometry|
M Niu, JH Cho, K Kodali, V Pagala, AA High, H Wang, Z Wu, Y Li, W Bi, ...
Analytical chemistry 89 (5), 2956-2963, 2017
|Quantitative protein analysis by mass spectrometry|
VR Pagala, AA High, X Wang, H Tan, K Kodali, A Mishra, K Kavdia, Y Xu, ...
Protein-Protein Interactions: Methods and Applications, 281-305, 2015
|Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes|
H Wang, AK Diaz, TI Shaw, Y Li, M Niu, JH Cho, BS Paugh, Y Zhang, ...
Nature communications 10 (1), 3718, 2019
|A key role for the ubiquitin ligase UBR4 in myofiber hypertrophy in Drosophila and mice|
LC Hunt, J Stover, B Haugen, TI Shaw, Y Li, VR Pagala, D Finkelstein, ...
Cell reports 28 (5), 1268-1281. e6, 2019
|Sequential elution interactome analysis of the mind bomb 1 ubiquitin ligase reveals a novel role in dendritic spine outgrowth|
J Mertz, H Tan, V Pagala, B Bai, PC Chen, Y Li, JH Cho, T Shaw, X Wang, ...
Molecular & Cellular Proteomics 14 (7), 1898-1910, 2015
|Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1|
X Yang, B Xu, B Mulvey, M Evans, S Jordan, YD Wang, V Pagala, J Peng, ...
Nature neuroscience 22 (3), 362-373, 2019
|PAX7 is a required target for microRNA-206-induced differentiation of fusion-negative rhabdomyosarcoma|
JA Hanna, MR Garcia, JC Go, D Finkelstein, K Kodali, V Pagala, X Wang, ...
Cell Death & Disease 7 (6), e2256-e2256, 2016
|Integrated genomic and proteomic analyses identify stimulus-dependent molecular changes associated with distinct modes of skeletal muscle atrophy|
LC Hunt, FA Graca, V Pagala, YD Wang, Y Li, ZF Yuan, Y Fan, M Labelle, ...
Cell reports 37 (6), 2021
|Ybx1 fine-tunes PRC2 activities to control embryonic brain development|
MK Evans, Y Matsui, B Xu, C Willis, J Loome, L Milburn, Y Fan, V Pagala, ...
Nature communications 11 (1), 4060, 2020
|Integrated approaches for analyzing U1-70K cleavage in Alzheimer’s disease|
B Bai, PC Chen, CM Hales, Z Wu, V Pagala, AA High, AI Levey, JJ Lah, ...
Journal of proteome research 13 (11), 4526-4534, 2014
|T cell epitope" hotspots" on the HIV Type 1 gp120 envelope protein overlap with tryptic fragments displayed by mass spectrometry|
SA Brown, TD Lockey, C Slaughter, KS Slobod, S Surman, A Zirkel, ...
AIDS Research & Human Retroviruses 21 (2), 165-170, 2005
|Antagonistic control of myofiber size and muscle protein quality control by the ubiquitin ligase UBR4 during aging|
LC Hunt, B Schadeberg, J Stover, B Haugen, V Pagala, YD Wang, ...
Nature Communications 12 (1), 1418, 2021