Ali Salehzadeh-Yazdi
Ali Salehzadeh-Yazdi
Computational Biologist, Constructor University
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Impairment of DNA methylation maintenance is the main cause of global demethylation in naive embryonic stem cells
F Von Meyenn, M Iurlaro, E Habibi, NQ Liu, A Salehzadeh-Yazdi, ...
Molecular cell 62 (6), 848-861, 2016
A systematic survey of centrality measures for protein-protein interaction networks
M Ashtiani, A Salehzadeh-Yazdi, Z Razaghi-Moghadam, H Hennig, ...
BMC systems biology 12, 1-17, 2018
CentiServer: a comprehensive resource, web-based application and R package for centrality analysis
M Jalili, A Salehzadeh-Yazdi, Y Asgari, SS Arab, M Yaghmaie, ...
PloS one 10 (11), e0143111, 2015
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation
Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ...
Genomics 105 (5-6), 275-281, 2015
Evolution of centrality measurements for the detection of essential proteins in biological networks
M Jalili, A Salehzadeh-Yazdi, S Gupta, O Wolkenhauer, M Yaghmaie, ...
Frontiers in physiology 7, 375, 2016
Controllability in cancer metabolic networks according to drug targets as driver nodes
Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad
PloS one 8 (11), e79397, 2013
HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens
H Ahmadi, A Ahmadi, S Azimzadeh-Jamalkandi, MA Shoorehdeli, ...
Genomics 101 (2), 94-100, 2013
Computational models for clinical applications in personalized medicine—guidelines and recommendations for data integration and model validation
CB Collin, T Gebhardt, M Golebiewski, T Karaderi, M Hillemanns, ...
Journal of personalized medicine 12 (2), 166, 2022
Comprehensive functional enrichment analysis of male infertility
SM Razavi, M Sabbaghian, M Jalili, A Divsalar, O Wolkenhauer, ...
Scientific reports 7 (1), 15778, 2017
Enzyme-constrained models and omics analysis of Streptomyces coelicolor reveal metabolic changes that enhance heterologous production
S Sulheim, T Kumelj, D van Dissel, A Salehzadeh-Yazdi, C Du, ...
Iscience 23 (9), 2020
Unveiling network-based functional features through integration of gene expression into protein networks
M Jalili, T Gebhardt, O Wolkenhauer, A Salehzadeh-Yazdi
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1864 (6 …, 2018
Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach
A Salehzadeh-Yazdi, Y Asgari, AA Saboury, A Masoudi-Nejad
PloS one 9 (11), e111686, 2014
Exploring the metabolic heterogeneity of cancers: A benchmark study of context-specific models
M Jalili, M Scharm, O Wolkenhauer, M Damaghi, A Salehzadeh-Yazdi
Journal of Personalized Medicine 11 (6), 496, 2021
CytoKavosh: a Cytoscape plug-in for finding network motifs in large biological networks
A Masoudi-Nejad, M Ansariola, Z Razaghi Moghadam Kashani, ...
Public Library of Science 7 (8), e43287, 2012
A metabolic model of intestinal secretions: the link between human microbiota and colorectal cancer progression
P Salahshouri, M Emadi-Baygi, M Jalili, FM Khan, O Wolkenhauer, ...
Metabolites 11 (7), 456, 2021
Meta-analysis of gene expression profiles in acute promyelocytic leukemia reveals involved pathways
M Jalili, A Salehzadeh-Yazdi, S Mohammadi, M Yaghmaie, ...
International Journal of Hematology-Oncology and Stem Cell Research 11 (1), 1, 2017
Cancerome: A hidden informative subnetwork of the diseasome
M Jalili, A Salehzadeh-Yazdi, M Yaghmaie, A Ghavamzadeh, ...
Computers in Biology and Medicine 76, 173-177, 2016
Computational structure analysis of biomacromolecule complexes by interface geometry
S Mahdavi, A Salehzadeh-Yazdi, A Mohades, A Masoudi-Nejad
Computational Biology and Chemistry 47, 16-23, 2013
Evolution of computational models in BioModels Database and the Physiome Model Repository
M Scharm, T Gebhardt, V Touré, A Bagnacani, A Salehzadeh-Yazdi, ...
BMC Systems Biology 12, 1-10, 2018
EU-STANDS4PM consortium; et al. Computational models for clinical applications in personalized medicine—Guidelines and recommendations for data integration and model validation
CB Collin, T Gebhardt, M Golebiewski, T Karaderi, M Hillemanns, ...
J. Pers. Med 12, 166, 2022
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