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Yan Wei Lim
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Lytic to temperate switching of viral communities
B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ...
Nature 531 (7595), 466-470, 2016
5672016
Metagenomic analysis of viruses in reclaimed water
K Rosario, C Nilsson, YW Lim, Y Ruan, M Breitbart
Environmental microbiology 11 (11), 2806-2820, 2009
3412009
Global microbialization of coral reefs
AF Haas, MFM Fairoz, LW Kelly, CE Nelson, EA Dinsdale, RA Edwards, ...
Nature microbiology 1 (6), 1-7, 2016
2842016
TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets
R Schmieder, YW Lim, F Rohwer, R Edwards
BMC bioinformatics 11, 1-14, 2010
2782010
Identification and removal of ribosomal RNA sequences from metatranscriptomes
R Schmieder, YW Lim, R Edwards
Bioinformatics 28 (3), 433-435, 2012
2402012
Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
LW Kelly, GJ Williams, KL Barott, CA Carlson, EA Dinsdale, RA Edwards, ...
Proceedings of the National Academy of Sciences 111 (28), 10227-10232, 2014
2392014
Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes
TFF Ng, DL Willner, YW Lim, R Schmieder, B Chau, C Nilsson, S Anthony, ...
PloS one 6 (6), e20579, 2011
2392011
Spatial distribution of microbial communities in the cystic fibrosis lung
D Willner, MR Haynes, M Furlan, R Schmieder, YW Lim, PB Rainey, ...
The ISME journal 6 (2), 471-474, 2012
2082012
Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities
YW Lim, R Schmieder, M Haynes, D Willner, M Furlan, M Youle, K Abbott, ...
Journal of Cystic Fibrosis 12 (2), 154-164, 2013
1942013
Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis
YW Lim, JS Evangelista III, R Schmieder, B Bailey, M Haynes, M Furlan, ...
Journal of clinical microbiology 52 (2), 425-437, 2014
1482014
Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2, 3-butanedione fermentation
KL Whiteson, S Meinardi, YW Lim, R Schmieder, H Maughan, R Quinn, ...
The ISME journal 8 (6), 1247-1258, 2014
1402014
Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung
RA Quinn, YW Lim, H Maughan, D Conrad, F Rohwer, KL Whiteson
MBio 5 (2), 10.1128/mbio. 00956-13, 2014
1282014
The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography
KL Whiteson, B Bailey, M Bergkessel, D Conrad, L Delhaes, B Felts, ...
American journal of respiratory and critical care medicine 189 (11), 1309-1315, 2014
1252014
Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung
D Willner, MR Haynes, M Furlan, N Hanson, B Kirby, YW Lim, PB Rainey, ...
American journal of respiratory cell and molecular biology 46 (2), 127-131, 2012
1202012
Three-dimensional microbiome and metabolome cartography of a diseased human lung
N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ...
Cell host & microbe 22 (5), 705-716. e4, 2017
1172017
A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation
RA Quinn, K Whiteson, YW Lim, P Salamon, B Bailey, S Mienardi, ...
The ISME journal 9 (4), 1024-1038, 2015
1112015
Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome
RA Quinn, VV Phelan, KL Whiteson, N Garg, BA Bailey, YW Lim, ...
The ISME journal 10 (6), 1483-1498, 2016
1102016
Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures
N Garg, CA Kapono, YW Lim, N Koyama, MJA Vermeij, D Conrad, ...
International journal of mass spectrometry 377, 719-727, 2015
1072015
Ecological networking of cystic fibrosis lung infections
RA Quinn, K Whiteson, YW Lim, J Zhao, D Conrad, JJ LiPuma, F Rohwer, ...
NPJ biofilms and microbiomes 2 (1), 4, 2016
932016
Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence
RA Quinn, MJA Vermeij, AC Hartmann, I Galtier d'Auriac, S Benler, ...
Proceedings of the Royal Society B: Biological Sciences 283 (1829), 20160469, 2016
792016
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