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Daniel Domingo-Fernández
Daniel Domingo-Fernández
Enveda Biosciences
Verified email at envedabio.com - Homepage
Title
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Cited by
Year
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
D Domingo-Fernandez, S Baksi, B Schultz, Y Gadiya, R Karki, T Raschka, ...
Bioinformatics, btaa834, 2020
1152020
The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling
S Mubeen, CT Hoyt, A Gemünd, M Hofmann-Apitius, H Fröhlich, ...
Frontiers in Genetics 10, 1203, 2019
982019
Using multi-scale genetic, neuroimaging and clinical data for predicting Alzheimer’s disease and reconstruction of relevant biological mechanisms
S Khanna, D Domingo-Fernández, A Iyappan, MA Emon, ...
Scientific reports 8 (1), 11173, 2018
612018
ComPath: An ecosystem for exploring, analyzing, and curating mappings across pathway databases
D Domingo-Fernández, CT Hoyt, C Bobis-Álvarez, J Marin-Llao, ...
npj Systems Biology and Applications 4 (1), 43, 2018
58*2018
Multimodal mechanistic signatures for neurodegenerative diseases (NeuroMMSig): a web server for mechanism enrichment
D Domingo-Fernández, AT Kodamullil, A Iyappan, M Naz, MA Emon, ...
Bioinformatics 33 (22), 3679-3681, 2017
422017
PathMe: Merging and exploring mechanistic pathway knowledge
D Domingo-Fernández, S Mubeen, J Marín-Llaó, CT Hoyt, ...
BMC Bioinformatics 20 (1), 243, 2019
412019
BioKEEN: a library for learning and evaluating biological knowledge graph embeddings
M Ali, CT Hoyt, D Domingo-Fernández, J Lehmann, H Jabeen
Bioinformatics 35 (18), 3538-3540, 2019
342019
Linking COVID-19 and heme-driven pathophysiologies: A combined computational–experimental approach
MT Hopp, D Domingo-Fernández, Y Gadiya, MS Detzel, R Graf, ...
Biomolecules 11 (5), 644, 2021
28*2021
Evaluating the Alzheimer's disease data landscape
C Birkenbihl, Y Salimi, D Domingo‐Fernándéz, S Lovestone, ...
Alzheimer's & Dementia: Translational Research & Clinical Interventions 6 (1 …, 2020
282020
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
CT Hoyt, D Domingo-Fernández, R Aldisi, L Xu, K Kolpeja, S Spalek, ...
Database 2019, baz068, 2019
272019
On the influence of several factors on pathway enrichment analysis
S Mubeen, A Tom Kodamullil, M Hofmann-Apitius, D Domingo-Fernández
Briefings in Bioinformatics 23 (3), bbac143, 2022
232022
BEL Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language
CT Hoyt, D Domingo-Fernández, M Hofmann-Apitius
Database 2018, bay126, 2018
222018
Drug2ways: Reasoning over causal paths in biological networks for drug discovery
D Rivas-Barragan, S Mubeen, F Guim-Bernat, M Hofmann-Apitius, ...
PLOS Computational Biology 16 (12), e1008464, 2020
212020
Clustering of Alzheimer’s and Parkinson’s disease based on genetic burden of shared molecular mechanisms
MA Emon, A Heinson, P Wu, D Domingo-Fernández, M Sood, H Vrooman, ...
Scientific Reports 10 (1), 19097, 2020
212020
Challenges of Integrative Disease Modeling in Alzheimer’s disease
S Golriz Khatami, C Robinson, C Birkenbihl, D Domingo-Fernández, ...
Frontiers in Molecular Biosciences 6, 158, 2020
202020
A computational approach for mapping heme biology in the context of hemolytic disorders
F Humayun, D Domingo-Fernández, AA Paul George, MT Hopp, ...
Frontiers in bioengineering and biotechnology 8, 74, 2020
192020
PTSD Biomarker Database: Deep Dive Meta-database for PTSD Biomarkers, Visualizations, and Analysis Tools
D Domingo-Fernandez, A Provost, J Marin-Llao, H Lasseter, K Diaz, ...
Database 2019, baz081, 2019
172019
Unifying the identification of biomedical entities with the Bioregistry
CT Hoyt, M Balk, TJ Callahan, D Domingo-Fernández, MA Haendel, ...
Scientific data 9 (1), 714, 2022
16*2022
STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs
H Balabin, CT Hoyt, C Birkenbihl, BM Gyori, JA Bachman, PG Ploeger, ...
Bioinformatics, btac001, 2022
162022
A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization
BT Schultz, A Zaliani, C Ebeling, J Reinshagen, D Bojkova, ...
Scientific Reports 11 (11049), 2020
16*2020
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