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Nasrin Akhter
Nasrin Akhter
Assistant Professor of Teaching, University at Buffalo
Verified email at buffalo.edu
Title
Cited by
Cited by
Year
From extraction of local structures of protein energy landscapes to improved decoy selection in template-free protein structure prediction
N Akhter, A Shehu
Molecules 23 (1), 216, 2018
362018
Simulation and performance analysis of adaptive filtering algorithms in noise cancellation
L Ferdouse, N Akhter, TH Nipa, FT Jaigirdar
arXiv preprint arXiv:1104.1962, 2011
352011
An energy landscape treatment of decoy selection in template-free protein structure prediction
N Akhter, W Qiao, A Shehu
Computation 6 (2), 39, 2018
192018
Graph-based community detection for decoy selection in template-free protein structure prediction
KL Kabir, L Hassan, Z Rajabi, N Akhter, A Shehu
Molecules 24 (5), 854, 2019
172019
From mutations to mechanisms and dysfunction via computation and mining of protein energy landscapes
W Qiao, N Akhter, X Fang, T Maximova, E Plaku, A Shehu
BMC genomics 19, 1-13, 2018
142018
Non-negative matrix factorization for selection of near-native protein tertiary structures
N Akhter, R Vangara, G Chennupati, BS Alexandrov, H Djidjev, A Shehu
2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM†…, 2019
122019
Unsupervised and supervised learning over the energy landscape for protein decoy selection
N Akhter, G Chennupati, KL Kabir, H Djidjev, A Shehu
Biomolecules 9 (10), 607, 2019
102019
From molecular energy landscapes to equilibrium dynamics via landscape analysis and markov state models
KL Kabir, N Akhter, A Shehu
Journal of bioinformatics and computational biology 17 (06), 1940014, 2019
92019
Decoy selection for protein structure prediction via extreme gradient boosting and ranking
N Akhter, G Chennupati, H Djidjev, A Shehu
BMC bioinformatics 21, 1-21, 2020
72020
Improved protein decoy selection via non-negative matrix factorization
N Akhter, KL Kabir, G Chennupati, R Vangara, BS Alexandrov, H Djidjev, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (3†…, 2021
62021
Community detection for decoy selection in template-free protein structure prediction
L Hassan, Z Rajabi, N Akhter, A Shehu
Proceedings of the 2018 ACM International Conference on Bioinformatics†…, 2018
62018
Deep ranking in template-free protein structure prediction
X Chen, N Akhter, Z Guo, T Wu, J Hou, A Shehu, J Cheng
Proceedings of the 11th ACM international conference on bioinformatics†…, 2020
52020
Learning organizations of protein energy landscapes: An application on decoy selection in template-free protein structure prediction
N Akhter, L Hassan, Z Rajabi, D BarbarŠ, A Shehu
Protein Supersecondary Structures: Methods and Protocols, 147-171, 2019
52019
A performance analysis of lms, rls and lattice based algorithms as applied to the area of linear prediction
N Akhter
Journal of Global Research in Computer Science 1 (5), 2010
52010
Connecting molecular energy landscape analysis with markov model-based analysis of equilibrium structural dynamics
KL Kabir, N Akhter, A Shehu
Proceedings of 11th International Conference on Bioinformatics and†…, 2019
42019
Unsupervised learning of conformational states present in molecular dynamics simulation data for summarization of equilibrium conformational dynamics
KL Kabir, N Akhter, A Shehu
Biophysical Journal 116 (3), 291a-292a, 2019
32019
Reconstructing and decomposing protein energy landscapes to organize structure spaces and reveal biologically-active states
N Akhter, J Lei, W Qiao, A Shehu
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM†…, 2018
32018
Improved decoy selection via machine learning and ranking
N Akhter, G Chennupati, H Djidjev, A Shehu
2018 IEEE 8th International Conference on Computational Advances in Bio and†…, 2018
32018
Forecasting gang homicides with multi-level multi-task learning
N Akhter, L Zhao, D Arias, H Rangwala, N Ramakrishnan
Social, Cultural, and Behavioral Modeling: 11th International Conference†…, 2018
32018
Reconstruction and decomposition of high-dimensional landscapes via unsupervised learning
J Lei, N Akhter, W Qiao, A Shehu
Proceedings of the 26th ACM SIGKDD International Conference on Knowledge†…, 2020
22020
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