Thomas Nordahl Petersen

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Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenVerified email at cpr.ku.dk
Frank AarestrupTechnical University of Denmark, DTUVerified email at food.dtu.dk
Gunnar von HeijneStockholm UniversityVerified email at dbb.su.se
Ole LundTechnical University of DenmarkVerified email at dtu.dk
Henrik NielsenAssociate Professor, Department of Health Technology, Technical University of DenmarkVerified email at dtu.dk
Morten NielsenDepartment of Health Technology, The Technical University ofVerified email at cbs.dtu.dk
Claus LundegaardDirector, ZS Associates, DiscoveryVerified email at zs.com
Nikolaj Sorgenfrei BlomSenior Researcher, DTUVerified email at dtu.dk
Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenVerified email at sund.ku.dk
Simon RasmussenProfessor, University of CopenhagenVerified email at sund.ku.dk
Bent PetersenSenior Researcher, PhD, Globe institute, University of CopenhagenVerified email at sund.ku.dk
Henrik Georg BohrAssociate Professor of Molecular Biophysics, Technical University of Denmark, Quantum Protein CenterVerified email at fysik.dtu.dk
Jakob BohrProfessor, DTU Nanotech, Technical University of DenmarkVerified email at nanotech.dtu.dk
Henrik M. Geertz-Hansen21st.BIOVerified email at 21st.bio
Michael GajhedeProfessor i proteinkrystallografi, Københavns UniversitetVerified email at sund.ku.dk
Martin F ThomsenPhD studentVerified email at cbs.dtu.dk
Adam FeistUC San Diego (UCSD) / Technical University of Denmark (DTU)Verified email at ucsd.edu
Katrine SchjoldagerCopenhagen Center for Glycomics, University of CopenhagenVerified email at sund.ku.dk
Ramneek GuptaNovo Nordisk Research Centre OxfordVerified email at novonordisk.com
Jose M G IzarzugazaNovo Nordisk, Bioinformatics and Data Mining DepartmentVerified email at novonordisk.com

Thomas Nordahl Petersen

DTU Food, National Food Institute, Denmark

Verified email at food.dtu.dk

Metagenomics neural networks anti-microbial resistance


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SignalP 4.0: discriminating signal peptides from transmembrane regions TN Petersen, S Brunak, G Von Heijne, H Nielsen Nature methods 8 (10), 785-786, 2011	10168	2011
SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019	2742	2019
SignalP 5.0 improves signal peptide predictions using deep neural networks JJA Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, O Winther, ... Nature biotechnology 37, 420-423, 2019	2618	2019
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019	785	2019
A generic method for assignment of reliability scores applied to solvent accessibility predictions B Petersen, TN Petersen, P Andersen, M Nielsen, C Lundegaard BMC structural biology 9, 1-10, 2009	740	2009
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles M Nielsen, C Lundegaard, O Lund, TN Petersen Nucleic acids research 38 (suppl_2), W576-W581, 2010	441	2010
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder MHK Johansson, V Bortolaia, S Tansirichaiya, FM Aarestrup, AP Roberts, ... Journal of Antimicrobial Chemotherapy 76 (1), 101-109, 2021	399	2021
Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021	339	2021
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ... Nature microbiology 3 (8), 898-908, 2018	298	2018
Prediction of protein secondary structure at 80% accuracy TN Petersen, C Lundegaard, M Nielsen, H Bohr, J Bohr, S Brunak, ... Proteins: Structure, Function, and Bioinformatics 41 (1), 17-20, 2000	212	2000
The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel β helix TN Petersen, S Kauppinen, S Larsen Structure 5 (4), 533-544, 1997	182	1997
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance P Munk, C Brinch, FD Møller, TN Petersen, RS Hendriksen, AM Seyfarth, ... Nature Communications 13 (1), 7251, 2022	128	2022
A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing KTBG Schjoldager, MB Vester-Christensen, CK Goth, TN Petersen, ... Journal of Biological Chemistry 286 (46), 40122-40132, 2011	116	2011
NetTurnP–neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features B Petersen, C Lundegaard, TN Petersen PloS one 5 (11), e15079, 2010	115	2010
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance T Nordahl Petersen, S Rasmussen, H Hasman, C Carøe, J Bælum, ... Scientific reports 5 (1), 11444, 2015	96	2015
Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data K Al-Nakeeb, TN Petersen, T Sicheritz-Pontén BMC bioinformatics 18, 1-7, 2017	82	2017
Pancreatic spasmolytic polypeptide: first three-dimensional structure of a member of the mammalian trefoil family of peptides M Gajhede, TN Petersen, A Henriksen, JFW Petersen, Z Dauter, ... Structure 1 (4), 253-262, 1993	82	1993
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ... PloS one 12 (5), e0176469, 2017	81	2017
Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation NS Christophersen, M Grønborg, TN Petersen, L Fjord-Larsen, ... Experimental neurology 204 (2), 791-801, 2007	72	2007
Cofactory: Sequence‐based prediction of cofactor specificity of Rossmann folds HM Geertz‐Hansen, N Blom, AM Feist, S Brunak, TN Petersen Proteins: Structure, Function, and Bioinformatics 82 (9), 1819-1828, 2014	56	2014

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