| Stacks: an analysis tool set for population genomics J Catchen, PA Hohenlohe, S Bassham, A Amores, WA Cresko Molecular ecology 22 (11), 3124-3140, 2013 | 3943 | 2013 |
| Genome-wide genetic marker discovery and genotyping using next-generation sequencing JW Davey, PA Hohenlohe, PD Etter, JQ Boone, JM Catchen, ML Blaxter Nature Reviews Genetics 12 (7), 499-510, 2011 | 2911 | 2011 |
| Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences JM Catchen, A Amores, P Hohenlohe, W Cresko, JH Postlethwait G3: Genes| genomes| genetics 1 (3), 171-182, 2011 | 2176 | 2011 |
| Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics NC Rochette, AG Rivera‐Colón, JM Catchen Molecular ecology 28 (21), 4737-4754, 2019 | 920 | 2019 |
| Lost in parameter space: a road map for stacks JR Paris, JR Stevens, JM Catchen Methods in Ecology and Evolution 8 (10), 1360-1373, 2017 | 622 | 2017 |
| The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ... Nature genetics 48 (4), 427-437, 2016 | 585 | 2016 |
| Resolving postglacial phylogeography using high-throughput sequencing KJ Emerson, CR Merz, JM Catchen, PA Hohenlohe, WA Cresko, ... Proceedings of the national academy of sciences 107 (37), 16196-16200, 2010 | 568 | 2010 |
| Next‐generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout PA Hohenlohe, SJ Amish, JM Catchen, FW Allendorf, G Luikart Molecular ecology resources 11, 117-122, 2011 | 474 | 2011 |
| Deriving genotypes from RAD-seq short-read data using Stacks NC Rochette, JM Catchen Nature protocols 12 (12), 2640-2659, 2017 | 467 | 2017 |
| Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication A Amores, J Catchen, A Ferrara, Q Fontenot, JH Postlethwait Genetics 188 (4), 799-808, 2011 | 399 | 2011 |
| The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits M Schartl, RB Walter, Y Shen, T Garcia, J Catchen, A Amores, I Braasch, ... Nature genetics 45 (5), 567-572, 2013 | 309 | 2013 |
| Automated identification of conserved synteny after whole-genome duplication JM Catchen, JS Conery, JH Postlethwait Genome research 19 (8), 1497-1505, 2009 | 254 | 2009 |
| Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard SC Campbell-Staton, ZA Cheviron, N Rochette, J Catchen, JB Losos, ... Science 357 (6350), 495-498, 2017 | 230 | 2017 |
| Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations JM Catchen, PA Hohenlohe, L Bernatchez, WC Funk, KR Andrews, ... Molecular ecology resources 17 (3), 362-365, 2017 | 195 | 2017 |
| Evolution of stickleback in 50 years on earthquake-uplifted islands EA Lescak, SL Bassham, J Catchen, O Gelmond, ML Sherbick, ... Proceedings of the National Academy of Sciences 112 (52), E7204-E7212, 2015 | 189 | 2015 |
| The gene history of zebrafish tlr4a and tlr4b is predictive of their divergent functions C Sullivan, J Charette, J Catchen, CR Lage, G Giasson, JH Postlethwait, ... The Journal of Immunology 183 (9), 5896-5908, 2009 | 181 | 2009 |
| The population structure and recent colonization history of O regon threespine stickleback determined using restriction‐site associated DNA‐sequencing J Catchen, S Bassham, T Wilson, M Currey, C O'Brien, Q Yeates, ... Molecular ecology 22 (11), 2864-2883, 2013 | 180 | 2013 |
| RAD cap: sequence capture of dual‐digest RAD seq libraries with identifiable duplicates and reduced missing data SL Hoffberg, TJ Kieran, JM Catchen, A Devault, BC Faircloth, R Mauricio, ... Molecular ecology resources 16 (5), 1264-1278, 2016 | 153 | 2016 |
| Evolution of a new function by degenerative mutation in cephalochordate steroid receptors JT Bridgham, JE Brown, A Rodríguez-Marí, JM Catchen, JW Thornton PLoS genetics 4 (9), e1000191, 2008 | 144 | 2008 |
| Parallel selection on thermal physiology facilitates repeated adaptation of city lizards to urban heat islands SC Campbell-Staton, KM Winchell, NC Rochette, J Fredette, I Maayan, ... Nature Ecology & Evolution 4 (4), 652-658, 2020 | 135 | 2020 |
William CreskoLorry Lokey Chair & Professor of Bioengineering, University of OregonVerified email at uoregon.edu
