Chih-Chiang Tsou
Chih-Chiang Tsou
Scorpion Therapeutics, Immatics US Inc, University of Michigan, Academia Sinica
Verified email at - Homepage
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DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics
CC Tsou, D Avtonomov, B Larsen, M Tucholska, H Choi, AC Gingras, ...
Nature methods 12 (3), 258-264, 2015
A multicenter study benchmarks software tools for label-free proteome quantification
P Navarro, J Kuharev, LC Gillet, OM Bernhardt, B MacLean, HL Röst, ...
Nature biotechnology 34 (11), 1130-1136, 2016
Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics
CF Tsai, YT Wang, HY Yen, CC Tsou, WC Ku, PY Lin, HY Chen, ...
Nature communications 6 (1), 1-8, 2015
mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry
G Teo, S Kim, CC Tsou, B Collins, AC Gingras, AI Nesvizhskii, H Choi
Journal of proteomics 129, 108-120, 2015
IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation
CC Tsou, CF Tsai, YH Tsui, PR Sudhir, YT Wang, YJ Chen, JY Chen, ...
Molecular & Cellular Proteomics 9 (1), 131-144, 2010
RNA editing derived epitopes function as cancer antigens to elicit immune responses
M Zhang, J Fritsche, J Roszik, LJ Williams, X Peng, Y Chiu, CC Tsou, ...
Nature communications 9 (1), 1-10, 2018
Data independent acquisition analysis in ProHits 4.0
G Liu, JDR Knight, JP Zhang, CC Tsou, J Wang, JP Lambert, B Larsen, ...
Journal of proteomics 149, 64-68, 2016
Untargeted, spectral library‐free analysis of data‐independent acquisition proteomics data generated using Orbitrap mass spectrometers
CC Tsou, CF Tsai, GC Teo, YJ Chen, AI Nesvizhskii
Proteomics 16 (15-16), 2257-2271, 2016
QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics
H Choi, S Kim, D Fermin, CC Tsou, AI Nesvizhskii
Journal of proteomics 129, 121-126, 2015
Fast VQ codebook search algorithm for grayscale image coding
YC Hu, BH Su, CC Tsou
Image and Vision Computing 26 (5), 657-666, 2008
The HLA ligandome landscape of chronic myeloid leukemia delineates novel T-cell epitopes for immunotherapy
T Bilich, A Nelde, L Bichmann, M Roerden, HR Salih, DJ Kowalewski, ...
Blood, The Journal of the American Society of Hematology 133 (6), 550-565, 2019
An informatics-assisted label-free quantitation strategy that depicts phosphoproteomic profiles in lung cancer cell invasion
YT Wang, CF Tsai, TC Hong, CC Tsou, PY Lin, SH Pan, TM Hong, ...
Journal of proteome research 9 (11), 5582-5597, 2010
An informatics-assisted label-free approach for personalized tissue membrane proteomics: case study on colorectal cancer
CL Han, JS Chen, EC Chan, CP Wu, KH Yu, KT Chen, CC Tsou, CF Tsai, ...
Molecular & Cellular Proteomics 10 (4), 2011
Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas
DCM Rolland, V Basrur, YK Jeon, C McNeil-Schwalm, D Fermin, ...
Proceedings of the National Academy of Sciences 114 (25), 6581-6586, 2017
New targeted approaches for the quantification of data‐independent acquisition mass spectrometry
R Bruderer, J Sondermann, CC Tsou, A Barrantes‐Freer, C Stadelmann, ...
Proteomics 17 (9), 1700021, 2017
Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry
RB Kitata, BRT Dimayacyac-Esleta, WK Choong, CF Tsai, TD Lin, ...
Journal of proteome research 14 (9), 3658-3669, 2015
Label-free quantitative proteomics and N-glycoproteomics analysis of KRAS-activated human bronchial epithelial cells
PR Sudhir, CH Chen, MP Kumari, MJ Wang, CC Tsou, TY Sung, JY Chen, ...
Molecular & cellular proteomics 11 (10), 901-915, 2012
Pitfalls in HLA ligandomics–How to catch a li (e) gand
J Fritsche, DJ Kowalewski, L Backert, F Gwinner, S Dorner, M Priemer, ...
Molecular & Cellular Proteomics, 100110, 2021
Tumor‐selective altered glycosylation and functional attenuation of CD73 in human hepatocellular carcinoma
KP Alcedo, A Guerrero, V Basrur, D Fu, ML Richardson, JS McLane, ...
Hepatology communications 3 (10), 1400-1414, 2019
Quantitative immunopeptidomics reveals a tumor stroma–specific target for T cell therapy
GB Kim, J Fritsche, S Bunk, A Mahr, F Unverdorben, K Tosh, H Kong, ...
Science translational medicine 14 (660), eabo6135, 2022
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