Emma Griffiths
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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
GL Winsor, EJ Griffiths, R Lo, BK Dhillon, JA Shay, FSL Brinkman
Nucleic acids research 44 (D1), D646-D653, 2016
Expanding fungal pathogenesis: Cryptococcus breaks out of the opportunistic box
JW Kronstad, R Attarian, B Cadieux, J Choi, CA D'souza, EJ Griffiths, ...
Nature reviews Microbiology 9 (3), 193-203, 2011
Expanding the soil antibiotic resistome: exploring environmental diversity
VM D’Costa, E Griffiths, GD Wright
Current opinion in microbiology 10 (5), 481-489, 2007
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
BP Alcock, W Huynh, R Chalil, KW Smith, AR Raphenya, MA Wlodarski, ...
Nucleic acids research 51 (D1), D690-D699, 2023
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
DM Dooley, EJ Griffiths, GS Gosal, PL Buttigieg, R Hoehndorf, MC Lange, ...
npj Science of Food 2 (1), 23, 2018
Critical issues in bacterial phylogeny
RS Gupta, E Griffiths
Theoretical population biology 61 (4), 423-434, 2002
Rifamycin antibiotic resistance by ADP-ribosylation: structure and diversity of Arr
J Baysarowich, K Koteva, DW Hughes, L Ejim, E Griffiths, K Zhang, ...
Proceedings of the National Academy of Sciences 105 (12), 4886-4891, 2008
Cross‐species discovery of syncretic drug combinations that potentiate the antifungal fluconazole
M Spitzer, E Griffiths, KM Blakely, J Wildenhain, L Ejim, L Rossi, ...
Molecular systems biology 7 (1), 499, 2011
Adaptation of Cryptococcus neoformans to mammalian hosts: integrated regulation of metabolism and virulence
J Kronstad, S Saikia, ED Nielson, M Kretschmer, W Jung, G Hu, ...
Eukaryotic cell 11 (2), 109-118, 2012
Prediction of synergism from chemical-genetic interactions by machine learning
J Wildenhain, M Spitzer, S Dolma, N Jarvik, R White, M Roy, E Griffiths, ...
Cell Systems 1 (6), 383-395, 2015
Identification of signature proteins that are distinctive of the Deinococcus-Thermus phylum
E Griffiths, RS Gupta
International Microbiology 10 (3), 201, 2007
Complete and Draft Genome Sequences of Six Members of the Aquificales
AL Reysenbach, N Hamamura, M Podar, E Griffiths, S Ferreira, ...
Journal of bacteriology 191 (6), 1992-1993, 2009
Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales
E Griffiths, RS Gupta
International Microbiology 7 (1), 41-52, 2004
BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species
E Griffiths, MS Ventresca, RS Gupta
BMC genomics 7, 1-20, 2006
The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to …
E Griffiths, RS Gupta
Microbiology 147 (9), 2611-2622, 2001
Chlamydiae-specific proteins and indels: novel tools for studies
RS Gupta, E Griffiths
Trends in microbiology 14 (12), 527-535, 2006
Context is everything: harmonization of critical food microbiology descriptors and metadata for improved food safety and surveillance
E Griffiths, D Dooley, M Graham, G Van Domselaar, FSL Brinkman, ...
Frontiers in microbiology 8, 260759, 2017
Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae
E Griffiths, RS Gupta
Microbiology 153 (8), 2648-2654, 2007
Distinctive Protein Signatures Provide Molecular Markers and Evidence for the Monophyletic Nature of the Deinococcus-Thermus Phylum
E Griffiths, RS Gupta
Journal of bacteriology 186 (10), 3097-3107, 2004
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