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Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Verified email at hms.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
24172013
Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
Advances in neural information processing systems 33, 22118-22133, 2020
23322020
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 2019
2064*2019
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
12572019
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
11762018
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
6172017
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
5022019
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge…, 2018
4392018
Network medicine framework for identifying drug-repurposing opportunities for COVID-19
D Morselli Gysi, Do Valle, M Zitnik, A Ameli, X Gan, O Varol, ...
Proceedings of the National Academy of Sciences 118 (19), e2025581118, 2021
4272021
Scientific discovery in the age of artificial intelligence
H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu, P Chandak, S Liu, ...
Nature 620 (7972), 47-60, 2023
390*2023
Interpretability of machine learning‐based prediction models in healthcare
G Stiglic, P Kocbek, N Fijacko, M Zitnik, K Verbert, L Cilar
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 10 (5…, 2020
3602020
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
3182018
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction and Applications to Repurposing and Screening
K Huang, T Fu, L Glass, M Zitnik, C Xiao, J Sun
arXiv preprint arXiv:2004.08919, 2020
314*2020
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
2952019
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
2762017
Gnnguard: Defending graph neural networks against adversarial attacks
X Zhang, M Zitnik
Advances in neural information processing systems 33, 9263-9275, 2020
2472020
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
241*2015
Therapeutics data commons: Machine learning datasets and tasks for drug discovery and development
K Huang, T Fu, W Gao, Y Zhao, Y Roohani, J Leskovec, CW Coley, ...
arXiv preprint arXiv:2102.09548, 2021
2142021
Towards a unified framework for fair and stable graph representation learning
C Agarwal, H Lakkaraju, M Zitnik
Uncertainty in Artificial Intelligence, 2114-2124, 2021
1702021
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
1632015
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