Open graph benchmark: Datasets for machine learning on graphs W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec Advances in neural information processing systems 33, 22118-22133, 2020 | 2708 | 2020 |
Orange: data mining toolbox in Python J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ... the Journal of machine Learning research 14 (1), 2349-2353, 2013 | 2616 | 2013 |
Gnnexplainer: Generating explanations for graph neural networks Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec Advances in neural information processing systems 32, 2019 | 2406* | 2019 |
Strategies for pre-training graph neural networks W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec arXiv preprint arXiv:1905.12265, 2019 | 1467 | 2019 |
Modeling polypharmacy side effects with graph convolutional networks M Zitnik, M Agrawal, J Leskovec Bioinformatics 34 (13), 457-466, 2018 | 1277 | 2018 |
Scientific discovery in the age of artificial intelligence H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu, P Chandak, S Liu, ... Nature 620 (7972), 47-60, 2023 | 688* | 2023 |
Predicting multicellular function through multi-layer tissue networks M Zitnik, J Leskovec Bioinformatics 33 (14), 190-198, 2017 | 660 | 2017 |
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman Information Fusion 50, 71-91, 2019 | 551 | 2019 |
Learning Structural Node Embeddings via Diffusion Wavelets C Donnat, M Zitnik, D Hallac, J Leskovec Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018 | 463 | 2018 |
Network medicine framework for identifying drug-repurposing opportunities for COVID-19 D Morselli Gysi, Í Do Valle, M Zitnik, A Ameli, X Gan, O Varol, ... Proceedings of the National Academy of Sciences 118 (19), e2025581118, 2021 | 462 | 2021 |
Network Enhancement as a general method to denoise weighted biological networks B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ... Nature Communications 9, 3108, 2018 | 430 | 2018 |
Interpretability of machine learning‐based prediction models in healthcare G Stiglic, P Kocbek, N Fijacko, M Zitnik, K Verbert, L Cilar Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 10 (5 …, 2020 | 427 | 2020 |
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction and Applications to Repurposing and Screening K Huang, T Fu, L Glass, M Zitnik, C Xiao, J Sun arXiv preprint arXiv:2004.08919, 2020 | 369* | 2020 |
Embedding Logical Queries on Knowledge Graphs WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec arXiv preprint arXiv:1806.01445, 2018 | 342 | 2018 |
Cross-type biomedical named entity recognition with deep multi-task learning X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han Bioinformatics 35 (10), 1745-1752, 2019 | 318 | 2019 |
Predicting human olfactory perception from chemical features of odor molecules PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ... Science 355 (6327), 820-826, 2017 | 302 | 2017 |
Gnnguard: Defending graph neural networks against adversarial attacks X Zhang, M Zitnik Advances in neural information processing systems 33, 9263-9275, 2020 | 286 | 2020 |
Therapeutics data commons: Machine learning datasets and tasks for drug discovery and development K Huang, T Fu, W Gao, Y Zhao, Y Roohani, J Leskovec, CW Coley, ... arXiv preprint arXiv:2102.09548, 2021 | 268 | 2021 |
Data Fusion by Matrix Factorization M Zitnik, B Zupan Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015 | 247* | 2015 |
Self-supervised contrastive pre-training for time series via time-frequency consistency X Zhang, Z Zhao, T Tsiligkaridis, M Zitnik Advances in Neural Information Processing Systems 35, 3988-4003, 2022 | 215 | 2022 |