Stefania Magnusdottir
Stefania Magnusdottir
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ...
Nature biotechnology 35 (1), 81-89, 2017
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele
Frontiers in genetics 6, 129714, 2015
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ...
Nucleic acids research 47 (D1), D614-D624, 2019
Modeling metabolism of the human gut microbiome
S Magnúsdóttir, I Thiele
Current opinion in biotechnology 51, 90-96, 2018
The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities
F Baldini, A Heinken, L Heirendt, S Magnusdottir, RMT Fleming, I Thiele
Bioinformatics 35 (13), 2332-2334, 2019
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine
A Heinken, J Hertel, G Acharya, DA Ravcheev, M Nyga, OE Okpala, ...
Nature Biotechnology 41 (9), 1320-1331, 2023
Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires
E Bauer, CC Laczny, S Magnusdottir, P Wilmes, I Thiele
Microbiome 3, 1-13, 2015
AGORA2: Large scale reconstruction of the microbiome highlights wide-spread drug-metabolising capacities
A Heinken, G Acharya, DA Ravcheev, J Hertel, M Nyga, OE Okpala, ...
BioRxiv, 2020.11. 09.375451, 2020
Binding proteins enhance specific uptake rate by increasing the substrate–transporter encounter rate
E Bosdriesz, S Magnúsdóttir, FJ Bruggeman, B Teusink, D Molenaar
The FEBS Journal 282 (12), 2394-2407, 2015
DEMETER: efficient simultaneous curation of genome-scale reconstructions guided by experimental data and refined gene annotations
A Heinken, S Magnúsdóttir, RMT Fleming, I Thiele
Bioinformatics 37 (21), 3974-3975, 2021
MetaboShiny: Interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data
JC Wolthuis, S Magnusdottir, M Pras-Raves, M Moshiri, JJM Jans, ...
Metabolomics 16, 1-6, 2020
Ablation of liver Fxr results in an increased colonic mucus barrier in mice
N Ijssennagger, KS van Rooijen, S Magnúsdóttir, JMR Pittol, ...
JHEP Reports 3 (5), 100344, 2021
Reply to" Challenges in modeling the human gut microbiome"
S Magnusdottir, A Heinken, RMT Fleming, I Thiele
Nature Biotechnology 36 (8), 686-691, 2018
Multi-country metabolic signature discovery for chicken health classification
JC Wolthuis, S Magnúsdóttir, E Stigter, YF Tang, J Jans, M Gilbert, ...
Metabolomics 19 (2), 9, 2023
Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in …
S Magnúsdóttir, JP Saraiva, A Bartholomäus, M Soheili, RB Toscan, ...
Frontiers in Microbiology 14, 1037845, 2023
Microbial protein metabolism in the monogastric gastrointestinal tract: a review
KCM Lammers-Jannink, S Magnúsdóttir, WF Pellikaan, J Pluske, ...
Understanding gut microbiomes as targets for improving pig gut health, 435-466, 2022
MetaboShiny-interactive processing, analysis and identification of untargeted metabolomics data
JC Wolthuis, S Magnusdottir, M Pras-Raves, JJM Jans, B Burgering, ...
bioRxiv, 734236, 2019
The media composition as a crucial element in high-throughput metabolic network reconstruction
B Borer, S Magnúsdóttir
Interface Focus 13 (2), 20220070, 2023
O Moran, G Veit, F Stanke, F Stanke, ST Pallenberg, S Tamm, S Hedtfeld, ...
Real-world experience with CFTR modulator therapy, 8, 2023
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