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| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 1-17, 2019 | 328 | 2019 |
| Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ... Nature cell biology 25 (8), 1089-1100, 2023 | 91 | 2023 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Genome Biology 25 (1), 53, 2024 | 33 | 2024 |
| Evaluation of cell segmentation methods without reference segmentations H Chen, RF Murphy Molecular Biology of the Cell, mbc. E22-08-0364, 2023 | 21 | 2023 |
| Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility H Chen, Y Sun, Y Shen Proteins: Structure, Function, and Bioinformatics 85 (3), 544-556, 2017 | 16 | 2017 |
| Predicting pathogenicity of missense variants with weakly supervised regression Y Cao, Y Sun, M Karimi, H Chen, O Moronfoye, Y Shen Human mutation 40 (9), 1579-1592, 2019 | 9 | 2019 |
| Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage K Börner, PD Blood, JC Silverstein, M Ruffalo, R Satija, SA Teichmann, ... bioRxiv, 2024.03. 27.587041, 2024 | 5 | 2024 |
| Assessing the contribution of tumor mutational phenotypes to cancer progression risk Y Tao, A Rajaraman, X Cui, Z Cui, H Chen, Y Zhao, J Eaton, H Kim, J Ma, ... PLOS Computational Biology 17 (3), e1008777, 2021 | 4 | 2021 |
| 3DCellComposer-A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation H Chen, RF Murphy bioRxiv, 2024 | 2 | 2024 |
| CytoSpatio: Learning cell type spatial relationships using multirange, multitype point process models H Chen, RF Murphy bioRxiv, 2024.10. 31.621408, 2024 | | 2024 |
