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Bogdan M. Kirilenko
Bogdan M. Kirilenko
Software developer at JetBrains, PyCharm team. Ex-MPI-CBG, ex-MSU.
Verified email at jetbrains.com
Title
Cited by
Cited by
Year
Six reference-quality genomes reveal evolution of bat adaptations
D Jebb, Z Huang, M Pippel, GM Hughes, K Lavrichenko, P Devanna, ...
Nature 583 (7817), 578-584, 2020
2422020
Evolutionary constraint and innovation across hundreds of placental mammals
MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ...
Science 380 (6643), eabn3943, 2023
832023
A genomic timescale for placental mammal evolution
NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ...
Science 380 (6643), eabl8189, 2023
512023
Integrating gene annotation with orthology inference at scale
BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ...
Science 380 (6643), eabn3107, 2023
502023
Leveraging base-pair mammalian constraint to understand genetic variation and human disease
PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ...
Science 380 (6643), eabn2937, 2023
422023
Three-dimensional genome rewiring in loci with human accelerated regions
KC Keough, S Whalen, F Inoue, PF Przytycki, T Fair, C Deng, M Steyert, ...
Science 380 (6643), eabm1696, 2023
312023
Mammalian evolution of human cis-regulatory elements and transcription factor binding sites
G Andrews, K Fan, HE Pratt, N Phalke, Zoonomia Consortium §, ...
Science 380 (6643), eabn7930, 2023
292023
Gene losses in the common vampire bat illuminate molecular adaptations to blood feeding
M Blumer, T Brown, MB Freitas, AL Destro, JA Oliveira, AE Morales, ...
Science advances 8 (12), eabm6494, 2022
282022
Insights into mammalian TE diversity through the curation of 248 genome assemblies
AB Osmanski, NS Paulat, J Korstian, JR Grimshaw, M Halsey, ...
Science 380 (6643), eabn1430, 2023
272023
Relating enhancer genetic variation across mammals to complex phenotypes using machine learning
IM Kaplow, AJ Lawler, DE Schäffer, C Srinivasan, HH Sestili, ME Wirthlin, ...
Science 380 (6643), eabm7993, 2023
262023
The contribution of historical processes to contemporary extinction risk in placental mammals
AP Wilder, MA Supple, A Subramanian, A Mudide, R Swofford, ...
Science 380 (6643), eabn5856, 2023
252023
Molecular parallelism in fast-twitch muscle proteins in echolocating mammals
JH Lee, KM Lewis, TW Moural, B Kirilenko, B Borgonovo, G Prange, ...
Science advances 4 (9), eaat9660, 2018
222018
The functional and evolutionary impacts of human-specific deletions in conserved elements
JR Xue, A Mackay-Smith, K Mouri, MF Garcia, MX Dong, JF Akers, ...
Science 380 (6643), eabn2253, 2023
182023
Convergent and lineage-specific genomic differences in limb regulatory elements in limbless reptile lineages
JG Roscito, K Sameith, BM Kirilenko, N Hecker, S Winkler, A Dahl, ...
Cell reports 38 (3), 2022
172022
Six new reference-quality bat genomes illuminate the molecular basis and evolution of bat adaptations
D Jebb, Z Huang, M Pippel, GM Hughes, K Lavrichenko, P Devanna, ...
BioRxiv, 836874, 2019
152019
Evolutionary analysis of bile acid-conjugating enzymes reveals a complex duplication and reciprocal loss history
BM Kirilenko, LR Hagey, S Barnes, CN Falany, M Hiller
Genome biology and evolution 11 (11), 3256-3268, 2019
152019
Vision-related convergent gene losses reveal SERPINE3’s unknown role in the eye
H Indrischek, J Hammer, A Machate, N Hecker, B Kirilenko, J Roscito, ...
Elife 11, e77999, 2022
112022
A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes
H Toh, C Yang, G Formenti, K Raja, L Yan, A Tracey, W Chow, K Howe, ...
BMC biology 20 (1), 245, 2022
92022
Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs
KL Moon, HJ Huson, K Morrill, MS Wang, X Li, K Srikanth, ...
Science 380 (6643), eabn5887, 2023
82023
Contradictory phylogenetic signals in the laurasiatheria anomaly zone
L Doronina, GM Hughes, D Moreno-Santillan, C Lawless, T Lonergan, ...
Genes 13 (5), 766, 2022
82022
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