|Assemblathon 1: a competitive assessment of de novo short read assembly methods|
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
|Molecular profiling reveals unique immune and metabolic features of melanoma brain metastases|
GM Fischer, A Jalali, DA Kircher, WC Lee, JL McQuade, LE Haydu, ...
Cancer discovery 9 (5), 628-645, 2019
|Genomes of the mouse collaborative cross|
A Srivastava, AP Morgan, ML Najarian, VK Sarsani, JS Sigmon, ...
Genetics 206 (2), 537-556, 2017
|A multi-tissue full lifespan epigenetic clock for mice|
MJ Thompson, K Chwiałkowska, L Rubbi, AJ Lusis, RC Davis, ...
Aging (Albany NY) 10 (10), 2832, 2018
|Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts|
XY Woo, J Giordano, A Srivastava, ZM Zhao, MW Lloyd, R de Bruijn, ...
Nature genetics 53 (1), 86-99, 2021
|Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis)|
TI Shaw, A Srivastava, WC Chou, L Liu, A Hawkinson, TC Glenn, ...
PloS one 7 (11), e48472, 2012
|Coincidental loss of DOCK8 function in NLRP10-deficient and C3H/HeJ mice results in defective dendritic cell migration|
JK Krishnaswamy, A Singh, U Gowthaman, R Wu, P Gorrepati, ...
Proceedings of the National Academy of Sciences 112 (10), 3056-3061, 2015
|Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment|
H Sun, S Cao, RJ Mashl, CK Mo, S Zaccaria, MC Wendl, SR Davies, ...
Nature communications 12 (1), 5086, 2021
|Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders|
H Fairfield, A Srivastava, G Ananda, R Liu, M Kircher, A Lakshminarayana, ...
Genome research 25 (7), 948-957, 2015
|The genome of C57BL/6J “Eve”, the mother of the laboratory mouse genome reference strain|
VK Sarsani, N Raghupathy, IT Fiddes, J Armstrong, F Thibaud-Nissen, ...
G3: Genes, Genomes, Genetics 9 (6), 1795-1805, 2019
|Systematic establishment of robustness and standards in patient-derived xenograft experiments and analysis|
YA Evrard, A Srivastava, J Randjelovic, JH Doroshow, DA Dean, ...
Cancer research 80 (11), 2286-2297, 2020
|Identification of EOMES-expressing spermatogonial stem cells and their regulation by PLZF|
M Sharma, A Srivastava, HE Fairfield, D Bergstrom, WF Flynn, RE Braun
Elife 8, e43352, 2019
|Transcriptome Analysis of Sarracenia, an Insectivorous Plant|
A Srivastava, WL Rogers, CM Breton, L Cai, RL Malmberg
DNA research 18 (4), 253-261, 2011
A Srivastava, J George, RKM Karuturi
|Development and validation of the JAX Cancer Treatment Profile™ for detection of clinically actionable mutations in solid tumors|
G Ananda, S Mockus, M Lundquist, V Spotlow, A Simons, T Mitchell, ...
Experimental and molecular pathology 98 (1), 106-112, 2015
|Genetic architectures of quantitative variation in RNA editing pathways|
T Gu, DM Gatti, A Srivastava, EM Snyder, N Raghupathy, P Simecek, ...
Genetics 202 (2), 787-798, 2016
|Discovery of transgene insertion sites by high throughput sequencing of mate pair libraries|
A Srivastava, VM Philip, I Greenstein, LB Rowe, M Barter, C Lutz, ...
BMC genomics 15, 1-9, 2014
|Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines|
XY Woo, A Srivastava, JH Graber, V Yadav, VK Sarsani, A Simons, ...
BMC medical genomics 12, 1-19, 2019
|Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation|
A Srivastava, V Kumar Sarsani, I Fiddes, SM Sheehan, RL Seger, ...
DNA Research 26 (1), 37-44, 2019
|AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes|
J Mrázek, S Xie, X Guo, A Srivastava
Bioinformatics 24 (8), 1041-1048, 2008