Virag Sharma
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Insights into sex chromosome evolution and aging from the genome of a short-lived fish
K Reichwald, A Petzold, P Koch, BR Downie, N Hartmann, S Pietsch, ...
Cell 163 (6), 1527-1538, 2015
A genomics approach reveals insights into the importance of gene losses for mammalian adaptations
V Sharma, N Hecker, JG Roscito, L Foerster, BE Langer, M Hiller
Nature communications 9 (1), 1215, 2018
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome
S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov, AE Firth, ...
Molecular cell 74 (3), 481-493. e6, 2019
Genes lost during the transition from land to water in cetaceans highlight genomic changes associated with aquatic adaptations
M Huelsmann, N Hecker, MS Springer, J Gatesy, V Sharma, M Hiller
Science advances 5 (9), eaaw6671, 2019
Convergent gene losses illuminate metabolic and physiological changes in herbivores and carnivores
N Hecker, V Sharma, M Hiller
Proceedings of the National Academy of Sciences 116 (8), 3036-3041, 2019
Role of Joshi's external stabilisation system fixator in the management of idiopathic clubfoot
S Suresh, A Ahmed, VK Sharma
Journal of Orthopaedic Surgery 11 (2), 194-201, 2003
A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment
V Sharma, AE Firth, I Antonov, O Fayet, JF Atkins, M Borodovsky, ...
Molecular biology and evolution 28 (11), 3195-3211, 2011
Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation
V Sharma, A Elghafari, M Hiller
Nucleic acids research 44 (11), e103-e103, 2016
Integrating gene annotation with orthology inference at scale
BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ...
Science 380 (6643), eabn3107, 2023
Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation
V Sharma, M Hiller
Nucleic acids research 45 (14), 8369-8377, 2017
Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report
P Meysman, J Barton, B Bravi, L Cohen-Lavi, V Karnaukhov, E Lilleskov, ...
ImmunoInformatics 9, 100024, 2023
Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals
V Sharma, T Lehmann, H Stuckas, L Funke, M Hiller
PLoS biology 16 (6), e2005293, 2018
CESAR 2.0 substantially improves speed and accuracy of comparative gene annotation
V Sharma, P Schwede, M Hiller
Bioinformatics 33 (24), 3985-3987, 2017
Effect of frequency and amplitude of FES pulses on muscle fatigue during toning of muscles
N Kumar, VK Sharma, RC Agnihotri, R Jindal, D Mehta, R Bhadur
CSIR, 2008
Gene Expression-Based Identification of Antigen-Responsive CD8+ T Cells on a Single-Cell Level
YF Fuchs, V Sharma, A Eugster, G Kraus, R Morgenstern, A Dahl, ...
Frontiers in Immunology 10, 2568, 2019
Convergent Losses of TLR5 Suggest Altered Extracellular Flagellin Detection in Four Mammalian Lineages
V Sharma, N Hecker, F Walther, H Stuckas, M Hiller
Molecular biology and evolution 37 (7), 1847-1854, 2020
Analysis of tetra- and hepta-nucleotides motifs promoting -1 ribosomal frameshifting in Escherichia coli
V Sharma, MF Prere, I Canal, AE Firth, JF Atkins, PV Baranov, O Fayet
Nucleic acids research 42 (11), 7210-7225, 2014
Transition to an Aquatic Habitat Permitted the Repeated Loss of the Pleiotropic KLK8 Gene in Mammals
N Hecker, V Sharma, M Hiller
Genome biology and evolution 9 (11), 3179-3188, 2017
SubCellProt: predicting protein subcellular localization using machine learning approaches
P Garg, V Sharma, P Chaudhari, N Roy
In silico biology 9 (1-2), 35-44, 2009
Productive mRNA stem loop-mediated transcriptional slippage: crucial features in common with intrinsic terminators
C Penno, V Sharma, A Coakley, M O’Connell Motherway, D van Sinderen, ...
Proceedings of the National Academy of Sciences 112 (16), E1984-E1993, 2015
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