| The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation B Palenik, J Grimwood, A Aerts, P Rouzé, A Salamov, N Putnam, ... Proceedings of the National Academy of Sciences 104 (18), 7705-7710, 2007 | 712 | 2007 |
| Pluses and minuses of ammonium and nitrate uptake and assimilation by phytoplankton and implications for productivity and community composition, with emphasis on nitrogen … PM Glibert, FP Wilkerson, RC Dugdale, JA Raven, CL Dupont, PR Leavitt, ... Limnology and Oceanography 61 (1), 165-197, 2016 | 711 | 2016 |
| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 679 | 2021 |
| Evolution and metabolic significance of the urea cycle in photosynthetic diatoms AE Allen, CL Dupont, M Oborník, A Horák, A Nunes-Nesi, JP McCrow, ... Nature 473 (7346), 203-207, 2011 | 584 | 2011 |
| Microbial metagenomics: beyond the genome JA Gilbert, CL Dupont Annual review of marine science 3 (1), 347-371, 2011 | 543 | 2011 |
| Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage CL Dupont, DB Rusch, S Yooseph, MJ Lombardo, R Alexander Richter, ... The ISME journal 6 (6), 1186-1199, 2012 | 533 | 2012 |
| Efficiency of the CO2-concentrating mechanism of diatoms BM Hopkinson, CL Dupont, AE Allen, FMM Morel Proceedings of the National Academy of Sciences 108 (10), 3830-3837, 2011 | 441 | 2011 |
| Copper toxicity and the origin of bacterial resistance—new insights and applications CL Dupont, G Grass, C Rensing Metallomics 3 (11), 1109-1118, 2011 | 391 | 2011 |
| Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus T Mock, RP Otillar, J Strauss, M McMullan, P Paajanen, J Schmutz, ... Nature 541 (7638), 536-540, 2017 | 389 | 2017 |
| History of biological metal utilization inferred through phylogenomic analysis of protein structures CL Dupont, A Butcher, RE Valas, PE Bourne, G Caetano-Anollés Proceedings of the National Academy of Sciences 107 (23), 10567-10572, 2010 | 339 | 2010 |
| Designer diatom episomes delivered by bacterial conjugation BJ Karas, RE Diner, SC Lefebvre, J McQuaid, APR Phillips, CM Noddings, ... Nature communications 6 (1), 6925, 2015 | 338 | 2015 |
| Genomic and functional adaptation in surface ocean planktonic prokaryotes S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ... Nature 468 (7320), 60-66, 2010 | 321 | 2010 |
| Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ... Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010 | 311 | 2010 |
| Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment B Palenik, Q Ren, CL Dupont, GS Myers, JF Heidelberg, JH Badger, ... Proceedings of the National Academy of Sciences 103 (36), 13555-13559, 2006 | 286 | 2006 |
| Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry CL Dupont, S Yang, B Palenik, PE Bourne Proceedings of the National Academy of Sciences 103 (47), 17822-17827, 2006 | 283 | 2006 |
| Genomic and proteomic characterization of “Candidatus Nitrosopelagicus brevis”: an ammonia-oxidizing archaeon from the open ocean AE Santoro, CL Dupont, RA Richter, MT Craig, P Carini, MR McIlvin, ... Proceedings of the National Academy of Sciences 112 (4), 1173-1178, 2015 | 275 | 2015 |
| Efficient de novo assembly of single-cell bacterial genomes from short-read data sets H Chitsaz, JL Yee-Greenbaum, G Tesler, MJ Lombardo, CL Dupont, ... Nature biotechnology 29 (10), 915-921, 2011 | 255 | 2011 |
| Host genetic control of the oral microbiome in health and disease A Gomez, JL Espinoza, DM Harkins, P Leong, R Saffery, M Bockmann, ... Cell host & microbe 22 (3), 269-278. e3, 2017 | 226 | 2017 |
| Functional tradeoffs underpin salinity-driven divergence in microbial community composition CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ... PloS one 9 (2), e89549, 2014 | 209 | 2014 |
| Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum JS McLean, MJ Lombardo, JH Badger, A Edlund, M Novotny, ... Proceedings of the National Academy of Sciences 110 (26), E2390-E2399, 2013 | 195 | 2013 |
Andrew E. AllenJ. Craig Venter Institute, Scripps Insitutuon of Oceanography (UCSD)Verified email at jcvi.org
