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Zheng Wang
Zheng Wang
Associate Professor, Department of Computer Science, University of Miami
Verified email at miami.edu - Homepage
Title
Cited by
Cited by
Year
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
10482013
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Genome Biology, 2016
4142016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
3582019
A neural network approach to ordinal regression
J Cheng, Z Wang, G Pollastri
2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008
2662008
NNcon: improved protein contact map prediction using 2D-recursive neural networks
AN Tegge, Z Wang, J Eickholt, J Cheng
Nucleic acids research 37 (suppl 2), W515-W518, 2009
2012009
Long non-coding RNAs as prognostic markers in human breast cancer
H Liu, J Li, P Koirala, X Ding, B Chen, Y Wang, Z Wang, C Wang, X Zhang, ...
Oncotarget 7 (15), 20584, 2016
1522016
SoyDB: a knowledge database of soybean transcription factors
Z Wang, M Libault, T Joshi, B Valliyodan, H Nguyen, D Xu, G Stacey, ...
BMC plant biology 10 (1), 14, 2010
1222010
MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8
Z Wang, J Eickholt, J Cheng
Bioinformatics 26 (7), 882-888, 2010
1122010
Evaluating the absolute quality of a single protein model using structural features and support vector machines
Z Wang, AN Tegge, J Cheng
Proteins: Structure, Function, and Bioinformatics 75 (3), 638-647, 2009
1102009
Predicting DNA methylation state of CpG dinucleotide using genome topological features and deep networks
Y Wang, T Liu, D Xu, H Shi, C Zhang, YY Mo, Z Wang
Scientific reports 6, 19598, 2016
1092016
GOGO: An improved algorithm to measure the semantic similarity between gene ontology terms
C Zhao, Z Wang
Scientific reports 8 (1), 15107, 2018
1082018
SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines
R Cao, Z Wang, Y Wang, J Cheng
BMC bioinformatics 15 (1), 120, 2014
1082014
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics
T Joshi, K Patil, MR Fitzpatrick, LD Franklin, Q Yao, JR Cook, Z Wang, ...
BMC genomics 13, 1-15, 2012
1062012
APOLLO: a quality assessment service for single and multiple protein models
Z Wang, J Eickholt, J Cheng
Bioinformatics 27 (12), 1715, 2011
1012011
Epigenomic signatures underpin the axonal regenerative ability of dorsal root ganglia sensory neurons
I Palmisano, MC Danzi, TH Hutson, L Zhou, E McLachlan, E Serger, ...
Nature neuroscience 22 (11), 1913-1924, 2019
822019
Prediction of global and local quality of CASP8 models by MULTICOM series
J Cheng, Z Wang, AN Tegge, J Eickholt
Proteins: Structure, Function, and Bioinformatics 77 (S9), 181-184, 2009
722009
HiCNN: a very deep convolutional neural network to better enhance the resolution of Hi-C data
T Liu, Z Wang
Bioinformatics 35 (21), 4222-4228, 2019
652019
A Protein Domain Co-Occurrence Network Approach for Predicting Protein Function and Inferring Species Phylogeny
Z Wang, XC Zhang, MH Le, D Xu, G Stacey, J Cheng
PloS one 6 (3), e17906, 2011
532011
The MULTICOM toolbox for protein structure prediction
J Cheng, J Li, Z Wang, J Eickholt, X Deng
BMC bioinformatics 13, 1-12, 2012
472012
Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experiment
R Cao, Z Wang, J Cheng
BMC structural biology 14 (1), 13, 2014
462014
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