Yun William Yu
Yun William Yu
Assistant Professor, Computational Biology, Carnegie Mellon University
Verified email at - Homepage
Cited by
Cited by
Contact tracing mobile apps for COVID-19: Privacy considerations and related trade-offs
H Cho, D Ippolito, YW Yu
arXiv preprint arXiv:2003.11511, 2020
The need for privacy with public digital contact tracing during the COVID-19 pandemic
Y Bengio, R Janda, YW Yu, D Ippolito, M Jarvie, D Pilat, B Struck, ...
The Lancet Digital Health 2 (7), e342-e344, 2020
Identification of endogenous acyl amino acids based on a targeted lipidomics approach 1 [S]
B Tan, DK O’Dell, YW Yu, MF Monn, S Burstein, JM Walker
Journal of lipid research 51 (1), 112-119, 2010
Levenshtein distance, sequence comparison and biological database search
B Berger, MS Waterman, YW Yu
IEEE transactions on information theory 67 (6), 3287-3294, 2020
Quality score compression improves genotyping accuracy
YW Yu, D Yorukoglu, J Peng, B Berger
Nature biotechnology 33 (3), 240, 2015
Targeted lipidomics: discovery of new fatty acyl amides
B Tan, HB Bradshaw, N Rimmerman, H Srinivasan, YW Yu, JF Krey, ...
The AAPS journal 8, E461-E465, 2006
Computational biology in the 21st century: Scaling with compressive algorithms
B Berger, NM Daniels, YW Yu
Communications of the ACM 59 (8), 72-80, 2016
Entropy-scaling search of massive biological data
YW Yu, NM Daniels, DC Danko, B Berger
Cell systems 1 (2), 130-140, 2015
Fast genotyping of known SNPs through approximate k-mer matching
A Shajii, D Yorukoglu, Y William Yu, B Berger
Bioinformatics 32 (17), i538-i544, 2016
Inherent privacy limitations of decentralized contact tracing apps
Y Bengio, D Ippolito, R Janda, M Jarvie, B Prud'homme, JF Rousseau, ...
Journal of the American Medical Informatics Association 28 (1), 193-195, 2021
Covi white paper
H Alsdurf, E Belliveau, Y Bengio, T Deleu, P Gupta, D Ippolito, R Janda, ...
arXiv preprint arXiv:2005.08502, 2020
Compressive mapping for next-generation sequencing
D Yorukoglu, YW Yu, J Peng, B Berger
Nature biotechnology 34 (4), 374-376, 2016
Metagenomic binning through low-density hashing
Y Luo, YW Yu, J Zeng, B Berger, J Peng
Bioinformatics 35 (2), 219-226, 2019
Theory of local k-mer selection with applications to long-read alignment
J Shaw, YW Yu
Bioinformatics 38 (20), 4659-4669, 2022
Targeted lipidomics approach for endogenous N-acyl amino acids in rat brain tissue
B Tan, YW Yu, MF Monn, HV Hughes, DK O’Dell, JM Walker
Journal of Chromatography B 877 (26), 2890-2894, 2009
Hyperminhash: Minhash in loglog space
YW Yu, GM Weber
IEEE Transactions on Knowledge and Data Engineering 34 (1), 328-339, 2022
Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification
YW Yu, D Yorukoglu, B Berger
International Conference on Research in Computational Molecular Biology, 385-399, 2014
Fast and robust metagenomic sequence comparison through sparse chaining with skani
J Shaw, YW Yu
Nature Methods 20 (11), 1661-1665, 2023
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads
S Nazeen, YW Yu, B Berger
Genome biology 21, 1-18, 2020
Navigating bottlenecks and trade-offs in genomic data analysis
B Berger, YW Yu
Nature Reviews Genetics 24 (4), 235-250, 2023
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Articles 1–20