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Irina Koester
Irina Koester
Scripps Institution of Oceanography, UCSD
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
141252019
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature Methods, 1-4, 2020
7952020
Biological Impacts of the 2013–2015 Warm-Water Anomaly in the Northeast Pacific: Winners, Losers, and the Future
PJSF Letícia M. Cavole, Alyssa M. Demko, Rachel E. Diner, Ashlyn Giddings ...
Oceanography 29 (2), 2016
6432016
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ...
Nature protocols 15 (6), 1954-1991, 2020
4072020
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ...
Nature communications 12 (1), 3832, 2021
1542021
Database-independent molecular formula annotation using Gibbs sampling through ZODIAC
M Ludwig, LF Nothias, K Dührkop, I Koester, M Fleischauer, MA Hoffmann, ...
Nature Machine Intelligence 2 (10), 629-641, 2020
138*2020
High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter
D Petras, I Koester, R Da Silva, BM Stephens, AF Haas, CE Nelson, ...
Frontiers in Marine Science 4, 405, 2017
1102017
A community resource for paired genomic and metabolomic data mining
MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ...
Nature Chemical Biology 17 (4), 363-368, 2021
1012021
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages
JM Gauglitz, CM Aceves, AA Aksenov, G Aleti, J Almaliti, A Bouslimani, ...
Food chemistry 302, 125290, 2020
582020
Mass spectrometry-based visualization of molecules associated with human habitats
D Petras, LF Nothias, RA Quinn, T Alexandrov, N Bandeira, A Bouslimani, ...
Analytical chemistry 88 (22), 10775-10784, 2016
522016
Short-term dynamics of North Sea bacterioplankton-dissolved organic matter coherence on molecular level
J Lucas, I Koester, A Wichels, J Niggemann, T Dittmar, U Callies, ...
Frontiers in Microbiology 7, 321, 2016
502016
Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals
L Wegley Kelly, CE Nelson, D Petras, I Koester, ZA Quinlan, MGI Arts, ...
Proceedings of the National Academy of Sciences 119 (5), e2110283119, 2022
332022
Spatiotemporal variability in seawater carbon chemistry for a coral reef flat in Kāne ‘ohe Bay, Hawai ‘i
HN Page, TA Courtney, EH De Carlo, NM Howins, I Koester, ...
Limnology and Oceanography 64 (3), 913-934, 2019
312019
Substantial oxygen consumption by aerobic nitrite oxidation in oceanic oxygen minimum zones
JM Beman, SM Vargas, JM Wilson, E Perez-Coronel, JS Karolewski, ...
Nature Communications 12 (1), 7043, 2021
152021
Molecular commerce on coral reefs: using metabolomics to reveal biochemical exchanges underlying holobiont biology and the ecology of coastal ecosystems
L Wegley Kelly, CE Nelson, LI Aluwihare, MGI Arts, PC Dorrestein, ...
Frontiers in Marine Science 8, 630799, 2021
152021
ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and In Silico Metabolite …
ZA Quinlan, I Koester, AT Aron, D Petras, LI Aluwihare, PC Dorrestein, ...
Metabolites 12 (12), 1275, 2022
82022
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations
I Koester, ZA Quinlan, LF Nothias, ME White, A Rabines, D Petras, ...
Environmental microbiology, 2022
82022
Refractory dissolved organic matter has similar chemical characteristics but different radiocarbon signatures with depth in the marine water column
ME White, TB Nguyen, I Koester, MC Lardie Gaylord, JM Beman, ...
Global Biogeochemical Cycles 37 (4), e2022GB007603, 2023
22023
Two-Dimensional Liquid Chromatography Tandem-Mass Spectrometry Untangles the Deep Metabolome of Marine Dissolved Organic Matter
SP Lambidis, T Schramm, K Steuer-Lodd, S Farrell, P Stincone, R Schmid, ...
12023
Importance of Coral Reef Community Composition and Benthic Metabolism to Seawater Carbonate Chemistry: Implications for Ocean Acidification
H Page, AJ Andersson, T Courtney, EH De Carlo, I Koester, N Howins, ...
2018 Ocean Sciences Meeting, 2018
12018
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Articles 1–20