| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17447 | 2019 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature Methods, 1-4, 2020 | 1017 | 2020 |
| Biological Impacts of the 2013–2015 Warm-Water Anomaly in the Northeast Pacific: Winners, Losers, and the Future PJSF Letícia M. Cavole, Alyssa M. Demko, Rachel E. Diner, Ashlyn Giddings ... Oceanography 29 (2), 2016 | 737 | 2016 |
| Reproducible molecular networking of untargeted mass spectrometry data using GNPS AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ... Nature protocols 15 (6), 1954-1991, 2020 | 514 | 2020 |
| Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ... Nature communications 12 (1), 3832, 2021 | 188 | 2021 |
| Database-independent molecular formula annotation using Gibbs sampling through ZODIAC M Ludwig, LF Nothias, K Dührkop, I Koester, M Fleischauer, MA Hoffmann, ... Nature Machine Intelligence 2 (10), 629-641, 2020 | 173* | 2020 |
| High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter D Petras, I Koester, R Da Silva, BM Stephens, AF Haas, CE Nelson, ... Frontiers in Marine Science 4, 405, 2017 | 125 | 2017 |
| A community resource for paired genomic and metabolomic data mining MA Schorn, S Verhoeven, L Ridder, F Huber, DD Acharya, AA Aksenov, ... Nature Chemical Biology 17 (4), 363-368, 2021 | 117 | 2021 |
| Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages JM Gauglitz, CM Aceves, AA Aksenov, G Aleti, J Almaliti, A Bouslimani, ... Food chemistry 302, 125290, 2020 | 65 | 2020 |
| Short-term dynamics of North Sea bacterioplankton-dissolved organic matter coherence on molecular level J Lucas, I Koester, A Wichels, J Niggemann, T Dittmar, U Callies, ... Frontiers in Microbiology 7, 321, 2016 | 53 | 2016 |
| Mass spectrometry-based visualization of molecules associated with human habitats D Petras, LF Nothias, RA Quinn, T Alexandrov, N Bandeira, A Bouslimani, ... Analytical chemistry 88 (22), 10775-10784, 2016 | 52 | 2016 |
| Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals L Wegley Kelly, CE Nelson, D Petras, I Koester, ZA Quinlan, MGI Arts, ... Proceedings of the National Academy of Sciences 119 (5), e2110283119, 2022 | 50 | 2022 |
| Spatiotemporal variability in seawater carbon chemistry for a coral reef flat in Kāne ‘ohe Bay, Hawai ‘i HN Page, TA Courtney, EH De Carlo, NM Howins, I Koester, ... Limnology and Oceanography 64 (3), 913-934, 2019 | 32 | 2019 |
| Substantial oxygen consumption by aerobic nitrite oxidation in oceanic oxygen minimum zones JM Beman, SM Vargas, JM Wilson, E Perez-Coronel, JS Karolewski, ... Nature Communications 12 (1), 7043, 2021 | 20 | 2021 |
| Ion identity molecular networking in the GNPS environment R Schmid, D Petras, LF Nothias, M Wang, AT Aron, A Jagels, H Tsugawa, ... bioRxiv, 2020.05. 11.088948, 2020 | 19 | 2020 |
| Molecular commerce on coral reefs: using metabolomics to reveal biochemical exchanges underlying holobiont biology and the ecology of coastal ecosystems L Wegley Kelly, CE Nelson, LI Aluwihare, MGI Arts, PC Dorrestein, ... Frontiers in Marine Science 8, 630799, 2021 | 17 | 2021 |
| ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and In Silico Metabolite … ZA Quinlan, I Koester, AT Aron, D Petras, LI Aluwihare, PC Dorrestein, ... Metabolites 12 (12), 1275, 2022 | 14 | 2022 |
| Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations I Koester, ZA Quinlan, LF Nothias, ME White, A Rabines, D Petras, ... Environmental microbiology, 2022 | 14 | 2022 |
| Refractory dissolved organic matter has similar chemical characteristics but different radiocarbon signatures with depth in the marine water column ME White, TB Nguyen, I Koester, MC Lardie Gaylord, JM Beman, ... Global Biogeochemical Cycles 37 (4), e2022GB007603, 2023 | 5 | 2023 |
| Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation WJ Sparagon, MGI Arts, ZA Quinlan, L Wegley Kelly, I Koester, ... Communications Biology 7 (1), 160, 2024 | 2 | 2024 |
Pieter C DorresteinUCSDVerified email at ucsd.edu
