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Xiaowen Shi
Xiaowen Shi
Principal Investigator, Zhejiang University
Verified email at cornell.edu
Title
Cited by
Cited by
Year
A Zinc Finger Motif-Containing Protein Is Essential for Chloroplast RNA Editing
T Sun, X Shi, G Friso, K Van Wijk, S Bentolila, MR Hanson
PLoS Genet 11 (3), 2015
1312015
RNA recognition motif-containing protein ORRM4 broadly affects mitochondrial RNA editing and impacts plant development and flowering
X Shi, A Germain, MR Hanson, S Bentolila
Plant Physiology 170 (1), 294-309, 2016
752016
Two RNA recognition motif-containing proteins are plant mitochondrial editing factors
X Shi, S Bentolila, MR Hanson
Nucleic Acids Research 43 (7), 3814-3825, 2015
722015
DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks
C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng
BMC bioinformatics 22, 1-18, 2021
602021
Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa
J Hou, X Shi, C Chen, MS Islam, AF Johnson, T Kanno, B Huettel, MR Yen, ...
Proceedings of the National Academy of Sciences 115 (48), E11321-E11330, 2018
592018
An Organelle RNA Recognition Motif Protein Is Required for Photosystem II Subunit psbF Transcript Editing
JB Hackett, X Shi, AT Kobylarz, MK Lucas, RL Wessendorf, KM Hines, ...
Plant Physiology 173 (4), 2278-2293, 2017
522017
Organelle RNA recognition motif-containing (ORRM) proteins are plastid and mitochondrial editing factors in Arabidopsis
X Shi, S Bentolila, MR Hanson
Plant Signaling & Behavior 11 (5), 294-309, 2016
492016
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution
N Blavet, H Yang, H Su, P Solanský, RN Douglas, M Karafiátová, ...
Proceedings of the National Academy of Sciences 118 (23), e2104254118, 2021
372021
ORRM5, an RNA recognition motif-containing protein, has a unique effect on mitochondrial RNA editing
X Shi, B Castandet, A Germain, MR Hanson, S Bentolila
Journal of Experimental Botany 68 (11), 2833-2847, 2017
362017
Genomic imbalance determines positive and negative modulation of gene expression in diploid maize
X Shi, H Yang, C Chen, J Hou, KM Hanson, PS Albert, T Ji, J Cheng, ...
The Plant Cell 33 (4), 917-939, 2021
262021
Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize
H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler
The Plant Cell 33 (4), 901-916, 2021
242021
Protection against Autoimmune Diabetes by Silkworm‐Produced GFP‐Tagged CTB‐Insulin Fusion Protein
Q Meng, W Wang, X Shi, Y Jin, Y Zhang
Journal of Immunology Research 2011 (1), 831704, 2011
202011
Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance
AF Johnson, J Hou, H Yang, X Shi, C Chen, MS Islam, T Ji, J Cheng, ...
Journal of genetics and genomics 47 (2), 93-103, 2020
182020
The gene balance hypothesis: epigenetics and dosage effects in plants
X Shi, C Chen, H Yang, J Hou, T Ji, J Cheng, RA Veitia, JA Birchler
Plant epigenetics and epigenomics: methods and protocols, 161-171, 2020
152020
Interpretable attention model in transcription factor binding site prediction with deep neural networks
C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng
bioRxiv, 2019
132019
Functional diversity of Arabidopsis organelle‐localized RNA‐recognition motif‐containing proteins
X Shi, MR Hanson, S Bentolila
Wiley Interdisciplinary Reviews: RNA 8 (5), e1420, 2017
132017
Effect of aneuploidy of a non‐essential chromosome on gene expression in maize
X Shi, H Yang, C Chen, J Hou, T Ji, J Cheng, JA Birchler
The Plant Journal 110 (1), 193-211, 2022
102022
MicroRNAs play regulatory roles in genomic balance
X Shi, H Yang, JA Birchler
BioEssays 45 (2), 2200187, 2023
82023
GNET2: an R package for constructing gene regulatory networks from transcriptomic data
C Chen, J Hou, X Shi, H Yang, JA Birchler, J Cheng
Bioinformatics 37 (14), 2068-2069, 2021
52021
Genomic imbalance modulates transposable element expression in maize
H Yang, X Shi, C Chen, J Hou, T Ji, J Cheng, JA Birchler
Plant Communications 4 (2), 2023
22023
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