| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 763 | 2013 |
| Assemblathon 1: A competitive assessment of de novo short read assembly methods DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ... Genome Research, 2011 | 611 | 2011 |
| C9orf72 dipeptide repeats impair the assembly, dynamics, and function of membrane-less organelles KH Lee, P Zhang, HJ Kim, DM Mitrea, M Sarkar, BD Freibaum, J Cika, ... Cell 167 (3), 774-788. e17, 2016 | 593 | 2016 |
| Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer’s Disease Progression B Bai, X Wang, Y Li, PC Chen, K Yu, K Kumar D, JM Yarbro, X Han, ... Neuron, 2020 | 294 | 2020 |
| Integrative proteomics and phosphoproteomics profiling reveals dynamic signaling networks and bioenergetics pathways underlying T cell activation H Tan*, K Yang*, Y Li*, TI Shaw*, Y Wang, DB Blanco, X Wang, JH Cho, ... Immunity 46 (3), 488-503, 2017 | 271 | 2017 |
| Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression JD Larson, LH Kasper, BS Paugh, H Jin, G Wu, CH Kwon, Y Fan, TI Shaw, ... Cancer Cell, 2018 | 211 | 2018 |
| The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis. KM Joo JH, Wang B, Frankel E, Ge L, Xu L, Iyengar R, Li-Harms X, Wright C ... Mol Cell 62 (4), 491-506, 2016 | 167 | 2016 |
| ULK1 and ULK2 regulate stress granule disassembly through phosphorylation and activation of VCP/p97 B Wang, BA Maxwell, JH Joo, Y Gwon, J Messing, A Mishra, TI Shaw, ... Molecular cell 74 (4), 742-757. e8, 2019 | 123 | 2019 |
| STRAW: species TRee analysis web server TI Shaw, Z Ruan, TC Glenn, L Liu Nucleic acids research 41 (W1), W238-W241, 2013 | 111 | 2013 |
| Mutant LRRK2 mediates peripheral and central immune responses leading to neurodegeneration in vivo E Kozina, S Sadasivan, Y Jiao, Y Dou, Z Ma, H Tan, K Kodali, T Shaw, ... Brain 141 (6), 1753-1769, 2018 | 110 | 2018 |
| Identification of therapeutic targets in rhabdomyosarcoma through integrated genomic, epigenomic, and proteomic analyses E Stewart, J McEvoy, H Wang, X Chen, V Honnell, M Ocarz, B Gordon, ... Cancer cell 34 (3), 411-426. e19, 2018 | 106 | 2018 |
| H3.3 K27M depletion increases differentiation and extends latency of diffuse intrinsic pontine glioma growth in vivo AB Silveira, LH Kasper, Y Fan, H Jin, G Wu, TI Shaw, X Zhu, JD Larson, ... Acta Neuropathologica, 2019 | 83 | 2019 |
| Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis) TI Shaw, A Srivastava, WC Chou, L Liu, A Hawkinson, TC Glenn, ... PloS one 7 (11), e48472, 2012 | 82 | 2012 |
| JUMPg: an integrative proteogenomics pipeline identifying unannotated proteins in human brain and cancer cells Y Li, X Wang, JH Cho, TI Shaw, Z Wu, B Bai, H Wang, S Zhou, TG Beach, ... Journal of proteome research 15 (7), 2309-2320, 2016 | 72 | 2016 |
| Structure and evolution of double minutes in diagnosis and relapse brain tumors K Xu, L Ding, TC Chang, Y Shao, J Chiang, H Mulder, S Wang, TI Shaw, ... Acta neuropathologica 137, 123-137, 2019 | 59 | 2019 |
| Cell-surface antigen profiling of pediatric brain tumors: B7-H3 is consistently expressed and can be targeted via local or systemic CAR T-cell delivery D Haydar, H Houke, J Chiang, Z Yi, Z Odé, K Caldwell, X Zhu, KS Mercer, ... Neuro-oncology 23 (6), 999-1011, 2021 | 54 | 2021 |
| Rapid microbiome changes in freshly deposited cow feces under field conditions K Wong*, TI Shaw*, A Oladeinde, TC Glenn, B Oakley, M Molina Frontiers in microbiology 7, 500, 2016 | 54 | 2016 |
| Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix). TC Glenn, TW Pierson, NJ Bayona-Vásquez, TJ Kieran, SL Hoffberg, ... PeerJ, 2019 | 50 | 2019 |
| Adapterama II: Universal amplicon sequencing on Illumina platforms (TaggiMatrix) TC Glenn, TW Pierson, NJ Bayona-Vásquez, TJ Kieran, SL Hoffberg, ... bioRxiv, 619544, 2019 | 50 | 2019 |
| Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes H Wang, AK Diaz, TI Shaw, Y Li, M Niu, JH Cho, BS Paugh, Y Zhang, ... Nature Communications 10 (1), 3718, 2019 | 47 | 2019 |
Junmin Peng, Ph.D.St. Jude Children's Research HospitalVerified email at stjude.org
