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Timothy I. Shaw
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
7852013
C9orf72 dipeptide repeats impair the assembly, dynamics, and function of membrane-less organelles
KH Lee, P Zhang, HJ Kim, DM Mitrea, M Sarkar, BD Freibaum, J Cika, ...
Cell 167 (3), 774-788. e17, 2016
6292016
Assemblathon 1: A competitive assessment of de novo short read assembly methods
DA Earl, K Bradnam, JS John, A Darling, D Lin, J Faas, HOK Yu, B Vince, ...
Genome Research, 2011
6252011
Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer’s Disease Progression
B Bai, X Wang, Y Li, PC Chen, K Yu, K Kumar D, JM Yarbro, X Han, ...
Neuron, 2020
3342020
Integrative proteomics and phosphoproteomics profiling reveals dynamic signaling networks and bioenergetics pathways underlying T cell activation
H Tan*, K Yang*, Y Li*, TI Shaw*, Y Wang, DB Blanco, X Wang, JH Cho, ...
Immunity 46 (3), 488-503, 2017
2862017
Histone H3.3 K27M Accelerates Spontaneous Brainstem Glioma and Drives Restricted Changes in Bivalent Gene Expression
JD Larson, LH Kasper, BS Paugh, H Jin, G Wu, CH Kwon, Y Fan, TI Shaw, ...
Cancer Cell, 2018
2352018
The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis.
KM Joo JH, Wang B, Frankel E, Ge L, Xu L, Iyengar R, Li-Harms X, Wright C ...
Mol Cell 62 (4), 491-506, 2016
1782016
ULK1 and ULK2 regulate stress granule disassembly through phosphorylation and activation of VCP/p97
B Wang, BA Maxwell, JH Joo, Y Gwon, J Messing, A Mishra, TI Shaw, ...
Molecular cell 74 (4), 742-757. e8, 2019
1382019
Mutant LRRK2 mediates peripheral and central immune responses leading to neurodegeneration in vivo
E Kozina, S Sadasivan, Y Jiao, Y Dou, Z Ma, H Tan, K Kodali, T Shaw, ...
Brain 141 (6), 1753-1769, 2018
1262018
Identification of therapeutic targets in rhabdomyosarcoma through integrated genomic, epigenomic, and proteomic analyses
E Stewart, J McEvoy, H Wang, X Chen, V Honnell, M Ocarz, B Gordon, ...
Cancer cell 34 (3), 411-426. e19, 2018
1202018
STRAW: species TRee analysis web server
TI Shaw, Z Ruan, TC Glenn, L Liu
Nucleic acids research 41 (W1), W238-W241, 2013
1122013
H3.3 K27M depletion increases differentiation and extends latency of diffuse intrinsic pontine glioma growth in vivo
AB Silveira, LH Kasper, Y Fan, H Jin, G Wu, TI Shaw, X Zhu, JD Larson, ...
Acta Neuropathologica, 2019
932019
Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis)
TI Shaw, A Srivastava, WC Chou, L Liu, A Hawkinson, TC Glenn, ...
PloS one 7 (11), e48472, 2012
842012
JUMPg: an integrative proteogenomics pipeline identifying unannotated proteins in human brain and cancer cells
Y Li, X Wang, JH Cho, TI Shaw, Z Wu, B Bai, H Wang, S Zhou, TG Beach, ...
Journal of proteome research 15 (7), 2309-2320, 2016
782016
Cell-surface antigen profiling of pediatric brain tumors: B7-H3 is consistently expressed and can be targeted via local or systemic CAR T-cell delivery
D Haydar, H Houke, J Chiang, Z Yi, Z Odé, K Caldwell, X Zhu, KS Mercer, ...
Neuro-oncology 23 (6), 999-1011, 2021
672021
Structure and evolution of double minutes in diagnosis and relapse brain tumors
K Xu, L Ding, TC Chang, Y Shao, J Chiang, H Mulder, S Wang, TI Shaw, ...
Acta neuropathologica 137, 123-137, 2019
672019
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix).
TC Glenn, TW Pierson, NJ Bayona-Vásquez, TJ Kieran, SL Hoffberg, ...
PeerJ, 2019
612019
Adapterama II: Universal amplicon sequencing on Illumina platforms (TaggiMatrix)
TC Glenn, TW Pierson, NJ Bayona-Vásquez, TJ Kieran, SL Hoffberg, ...
bioRxiv, 619544, 2019
612019
Rapid microbiome changes in freshly deposited cow feces under field conditions
K Wong*, TI Shaw*, A Oladeinde, TC Glenn, B Oakley, M Molina
Frontiers in microbiology 7, 500, 2016
572016
Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes
H Wang, AK Diaz, TI Shaw, Y Li, M Niu, JH Cho, BS Paugh, Y Zhang, ...
Nature Communications 10 (1), 3718, 2019
522019
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