simon hubbard

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Chris GrantProfessor of Biochemistry, University of ManchesterVerified email at manchester.ac.uk
Robert Beynonuniversity of liverpoolVerified email at liv.ac.uk
S.G. OliverUniversity of CambridgeVerified email at cam.ac.uk
Mark AsheThe University of ManchesterVerified email at manchester.ac.uk
Norman W. PatonProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Andrew JonesDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolVerified email at liverpool.ac.uk
Graham Pavitt (GD Pavitt)Faculty of Biology Medicine and Health, University of ManchesterVerified email at manchester.ac.uk
Craig LawlessDirector of Bioinformatics at InovivVerified email at inoviv.com
Julian SelleyUniversity of ManchesterVerified email at manchester.ac.uk
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
Stephen HolmanAssociate Principal Scientist, AstraZenecaVerified email at astrazeneca.com
Christopher KershawHealthcare Scientist, North-West Genomic Laboratory Hub, Manchester University NHS Foundation TrustVerified email at manchester.ac.uk
Lydia Castelliuniversity of manchesterVerified email at manchester.ac.uk
Claire E. EyersAPVC (Research); Professor, Department of Biochemistry and Systems Biology, ISMIB, University ofVerified email at liverpool.ac.uk
William RoweVerified email at cofactory.co.uk
Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Magnus RattrayUniversity of ManchesterVerified email at manchester.ac.uk
Nick TalbotThe Sainsbury LaboratoryVerified email at tsl.ac.uk
Joseph L CostelloUniversity of ExeterVerified email at exeter.ac.uk
Victoria HarmanFaculty of Health and Life Sciences, University of LiverpoolVerified email at liverpool.ac.uk

simon hubbard

Professor of Computational Biology, University of Manchester

Verified email at manchester.ac.uk

Proteomics computational biology control of gene expression


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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004	2983	2004
Naccess SJ Hubbard, JM Thornton Computer Program, Department of Biochemistry and Molecular Biology …, 1993	2540*	1993
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms Genome sequence of red jungle fowl: Washington University School of Medicine ... Nature 432 (7018), 717-722, 2004	631	2004
The structural aspects of limited proteolysis of native proteins SJ Hubbard Biochimica et Biophysica Acta (BBA)-Protein Structure and Molecular …, 1998	528	1998
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis D Shenton, JB Smirnova, JN Selley, K Carroll, SJ Hubbard, GD Pavitt, ... Journal of Biological Chemistry 281 (39), 29011-29021, 2006	481	2006
Molecular recognition: conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors SJ Hubbard, SF Campbell, JM Thornton Journal of molecular biology 220 (2), 507-530, 1991	453	1991
A comprehensive collection of chicken cDNAs PE Boardman, J Sanz-Ezquerro, IM Overton, DW Burt, E Bosch, WT Fong, ... Current biology 12 (22), 1965-1969, 2002	395	2002
A systematic approach to modeling, capturing, and disseminating proteomics experimental data CF Taylor, NW Paton, KL Garwood, PD Kirby, DA Stead, Z Yin, ... Nature biotechnology 21 (3), 247-254, 2003	315	2003
Modeling studies of the change in conformation required for cleavage of limited proteolytic sites SJ Hubbard, F Eisenmenger, JM Thornton Protein Science 3 (5), 757-768, 1994	283	1994
Intramolecular cavities in globular proteins SJ Hubbard, KH Gross, P Argos Protein Engineering, Design and Selection 7 (5), 613-626, 1994	236	1994
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics JA Siepen, EJ Keevil, D Knight, SJ Hubbard Journal of proteome research 6 (1), 399-408, 2007	229	2007
The mzIdentML data standard for mass spectrometry-based proteomics results AR Jones, M Eisenacher, G Mayer, O Kohlbacher, J Siepen, SJ Hubbard, ... Molecular & Cellular Proteomics 11 (7), M111. 014381-1-M111. 014381-10, 2012	228	2012
Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, ... PLoS One 3 (6), e2300, 2008	223	2008
The chicken as a model for large-scale analysis of vertebrate gene function WRA Brown, SJ Hubbard, C Tickle, SA Wilson Nature Reviews Genetics 4 (2), 87-98, 2003	212	2003
Differential expression of ion channel transcripts in atrial muscle and sinoatrial node in rabbit JO Tellez, H Dobrzynski, ID Greener, GM Graham, E Laing, H Honjo, ... Circulation research 99 (12), 1384-1393, 2006	207	2006
Cavities and packing at protein interfaces SJ Hubbard, P Argos Protein Science 3 (12), 2194-2206, 1994	188	1994
BioMart Central Portal: an open database network for the biological community JM Guberman, J Ai, O Arnaiz, J Baran, A Blake, R Baldock, C Chelala, ... Database 2011, bar041, 2011	181	2011
Conceptual modelling of genomic information NW Paton, SA Khan, A Hayes, F Moussouni, A Brass, K Eilbeck, ... Bioinformatics 16 (6), 548-557, 2000	172	2000
CONSeQuence: prediction of reference peptides for absolute quantitative proteomics using consensus machine learning approaches CE Eyers, C Lawless, DC Wedge, KW Lau, SJ Gaskell, SJ Hubbard Molecular & Cellular Proteomics 10 (11), 2011	154	2011
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures. SJ Hubbard, RJ Beynon, JM Thornton Protein engineering 11 (5), 349-359, 1998	153	1998

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