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Song Li
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Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling
S Li, SM Assmann, R Albert
PLoS biology 4 (10), e312, 2006
5222006
Boolean network simulations for life scientists
I Albert, J Thakar, S Li, R Zhang, R Albert
Source code for biology and medicine 3, 1-8, 2008
3792008
High-resolution expression map of the Arabidopsis root reveals alternative splicing and lincRNA regulation
S Li, M Yamada, X Han, U Ohler, PN Benfey
Developmental cell 39 (4), 508-522, 2016
2832016
Soil bacterial and fungal communities show distinct recovery patterns during forest ecosystem restoration
S Sun, S Li, BN Avera, BD Strahm, BD Badgley
Applied and Environmental Microbiology 83 (14), e00966-17, 2017
2322017
Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells
RS Wang, S Pandey, S Li, TE Gookin, Z Zhao, R Albert, SM Assmann
BMC genomics 12, 1-24, 2011
2172011
Multilevel regulation of abiotic stress responses in plants
DC Haak, T Fukao, R Grene, Z Hua, R Ivanov, G Perrella, S Li
Frontiers in plant science 8, 1564, 2017
1932017
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G‐protein action
S Pandey, RS Wang, L Wilson, S Li, Z Zhao, TE Gookin, SM Assmann, ...
Molecular systems biology 6 (1), 372, 2010
1512010
Paired-End Analysis of Transcription Start Sites in Arabidopsis Reveals Plant-Specific Promoter Signatures
T Morton, J Petricka, DL Corcoran, S Li, CM Winter, A Carda, PN Benfey, ...
The Plant Cell 26 (7), 2746-2760, 2014
1392014
Antibiotics ameliorate lupus-like symptoms in mice
Q Mu, VJ Tavella, JL Kirby, TE Cecere, M Chung, J Lee, S Li, SA Ahmed, ...
Scientific reports 7 (1), 13675, 2017
1162017
DeepTE: a computational method for de novo classification of transposons with convolutional neural network
H Yan, A Bombarely, S Li
Bioinformatics 36 (15), 4269-4275, 2020
882020
Obtaining and analysis of flanking sequences from T-DNA transformants of Arabidopsis
G Qin, D Kang, Y Dong, Y Shen, L Zhang, X Deng, Y Zhang, S Li, N Chen, ...
Plant Science 165 (5), 941-949, 2003
862003
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
S Li, LM Liberman, N Mukherjee, PN Benfey, U Ohler
Genome research 23 (10), 1730-1739, 2013
692013
Establishment of expression in the SHORTROOT-SCARECROW transcriptional cascade through opposing activities of both activators and repressors
EE Sparks, C Drapek, A Gaudinier, S Li, M Ansariola, N Shen, ...
Developmental Cell 39 (5), 585-596, 2016
632016
A machine learning approach to predict gene regulatory networks in seed development in Arabidopsis
Y Ni, D Aghamirzaie, H Elmarakeby, E Collakova, S Li, R Grene, ...
Frontiers in plant science 7, 1936, 2016
622016
Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets
TA Farazi, CS Leonhardt, N Mukherjee, A Mihailovic, S Li, KEA Max, ...
Rna 20 (7), 1090-1102, 2014
602014
Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem
JR Wendrich, BK Möller, S Li, S Saiga, R Sozzani, PN Benfey, B De Rybel, ...
Proceedings of the National Academy of Sciences 114 (42), E8922-E8929, 2017
532017
Overlapping and stress‐specific transcriptomic and hormonal responses to flooding and drought in soybean
BG Tamang, S Li, D Rajasundaram, S Lamichhane, T Fukao
The Plant Journal 107 (1), 100-117, 2021
482021
Genome wide association study and genomic selection of amino acid concentrations in soybean seeds
J Qin, A Shi, Q Song, S Li, F Wang, Y Cao, W Ravelombola, Q Song, ...
Frontiers in Plant Science 10, 1445, 2019
432019
Cyberbiosecurity challenges of pathogen genome databases
BA Vinatzer, LS Heath, HMJ Almohri, MJ Stulberg, C Lowe, S Li
Frontiers in bioengineering and biotechnology 7, 106, 2019
422019
Genome-wide association mapping of resistance to Phytophthora sojae in a soybean [Glycine max (L.) Merr.] germplasm panel from maturity groups IV and V
J Qin, Q Song, A Shi, S Li, M Zhang, B Zhang
PLoS One 12 (9), e0184613, 2017
402017
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Articles 1–20