Thea Van Rossum
Thea Van Rossum
Senior Bioinformatician, Koonkie Inc
Verified email at
Cited by
Cited by
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes
GL Winsor, T Van Rossum, R Lo, B Khaira, MD Whiteside, REW Hancock, ...
Nucleic acids research 37 (suppl_1), D483-D488, 2009
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
GL Winsor, B Khaira, T Van Rossum, R Lo, MD Whiteside, FSL Brinkman
Bioinformatics 24 (23), 2803-2804, 2008
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
GL Winsor, B Khaira, T Van Rossum, R Lo, MD Whiteside, FSL Brinkman
Bioinformatics 24 (23), 2803-2804, 2008
Diversity within species: interpreting strains in microbiomes
T Van Rossum, P Ferretti, OM Maistrenko, P Bork
Nature Reviews Microbiology 18 (9), 491-506, 2020
Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities
MA Peabody, T Van Rossum, R Lo, FSL Brinkman
BMC bioinformatics 16, 1-19, 2015
Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data
A Zoubarev, KM Hamer, KD Keshav, EL McCarthy, JRC Santos, ...
Bioinformatics 28 (17), 2272-2273, 2012
A faecal microbiota signature with high specificity for pancreatic cancer
E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ...
Gut 71 (7), 1359-1372, 2022
Towards the biogeography of prokaryotic genes
LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ...
Nature 601 (7892), 252-256, 2022
A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples
MI Uyaguari-Diaz, M Chan, BL Chaban, MA Croxen, JF Finke, JE Hill, ...
Microbiome 4, 1-19, 2016
Year-long metagenomic study of river microbiomes across land use and water quality
T Van Rossum, MA Peabody, MI Uyaguari-Diaz, KI Cronin, M Chan, ...
Frontiers in microbiology 6, 1405, 2015
Drivers and determinants of strain dynamics following fecal microbiota transplantation
TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ...
Nature medicine 28 (9), 1902-1912, 2022
SLIMS—a user-friendly sample operations and inventory management system for genotyping labs
T Van Rossum, B Tripp, D Daley
Bioinformatics 26 (14), 1808-1810, 2010
Disruption of the gut microbiota with antibiotics exacerbates acute vascular rejection
K Rey, S Manku, W Enns, T Van Rossum, K Bushell, RD Morin, ...
Transplantation 102 (7), 1085-1095, 2018
Efficacy of Bifidobacterium longum, B. infantis and Lactobacillus acidophilus probiotics to prevent gut dysbiosis in preterm infants of 28+0–32+6 weeks of gestation …
J Marißen, A Haiß, C Meyer, T Van Rossum, LM Buente, D Frommhold, ...
BMJ open 9 (11), e032617, 2019
Meconium microbiome of very preterm infants across Germany
J Klopp, P Ferretti, CU Meyer, K Hilbert, A Haiß, J Marißen, P Henneke, ...
MSphere 7 (1), e00808-21, 2022
The Composition of Midgut Bacteria in Aedes aegypti (Diptera: Culicidae) That Are Naturally Susceptible or Refractory to Dengue Viruses
H Coatsworth, PA Caicedo, T Van Rossum, CB Ocampo, C Lowenberger
Journal of Insect Science 18 (6), 12, 2018
Force-induced polarized mitosis of endothelial and smooth muscle cells in arterial remodeling
D Dajnowiec, PJB Sabatini, TC Van Rossum, JTK Lam, M Zhang, ...
Hypertension 50 (1), 255-260, 2007
Microbiome analysis across a natural copper gradient at a proposed northern Canadian mine site
T Van Rossum, MM Pylatuk, HL Osachoff, EJ Griffiths, R Lo, M Quach, ...
Frontiers in Environmental Science 3, 84, 2016
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
T Van Rossum, PI Costea, L Paoli, R Alves, R Thielemann, S Sunagawa, ...
Bioinformatics 38 (4), 1162-1164, 2022
Spatiotemporal dynamics of river viruses, bacteria and microeukaryotes
TV Rossum, MI Uyaguari-Diaz, M Vlok, MA Peabody, A Tian, KI Cronin, ...
bioRxiv, 259861, 2018
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