| Diversity within species: interpreting strains in microbiomes T Van Rossum, P Ferretti, OM Maistrenko, P Bork Nature Reviews Microbiology 18 (9), 491-506, 2020 | 336 | 2020 |
| Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes GL Winsor, T Van Rossum, R Lo, B Khaira, MD Whiteside, REW Hancock, ... Nucleic acids research 37 (suppl_1), D483-D488, 2009 | 317 | 2009 |
| The Burkholderia Genome Database: facilitating flexible queries and comparative analyses GL Winsor, B Khaira, T Van Rossum, R Lo, MD Whiteside, FSL Brinkman Bioinformatics 24 (23), 2803-2804, 2008 | 297 | 2008 |
| A faecal microbiota signature with high specificity for pancreatic cancer E Kartal, TSB Schmidt, E Molina-Montes, S Rodríguez-Perales, J Wirbel, ... Gut 71 (7), 1359-1372, 2022 | 178 | 2022 |
| Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities MA Peabody, T Van Rossum, R Lo, FSL Brinkman BMC bioinformatics 16, 1-19, 2015 | 178 | 2015 |
| Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data A Zoubarev, KM Hamer, KD Keshav, EL McCarthy, JRC Santos, ... Bioinformatics 28 (17), 2272-2273, 2012 | 134 | 2012 |
| Towards the biogeography of prokaryotic genes LP Coelho, R Alves, ÁR Del Río, PN Myers, CP Cantalapiedra, ... Nature 601 (7892), 252-256, 2022 | 132 | 2022 |
| Drivers and determinants of strain dynamics following fecal microbiota transplantation TSB Schmidt, SS Li, OM Maistrenko, W Akanni, LP Coelho, S Dolai, ... Nature medicine 28 (9), 1902-1912, 2022 | 119 | 2022 |
| A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples MI Uyaguari-Diaz, M Chan, BL Chaban, MA Croxen, JF Finke, JE Hill, ... Microbiome 4, 1-19, 2016 | 104 | 2016 |
| Year-long metagenomic study of river microbiomes across land use and water quality T Van Rossum, MA Peabody, MI Uyaguari-Diaz, KI Cronin, M Chan, ... Frontiers in microbiology 6, 1405, 2015 | 76 | 2015 |
| SLIMS—a user-friendly sample operations and inventory management system for genotyping labs T Van Rossum, B Tripp, D Daley Bioinformatics 26 (14), 1808-1810, 2010 | 39 | 2010 |
| Disruption of the gut microbiota with antibiotics exacerbates acute vascular rejection K Rey, S Manku, W Enns, T Van Rossum, K Bushell, RD Morin, ... Transplantation 102 (7), 1085-1095, 2018 | 36 | 2018 |
| Efficacy of Bifidobacterium longum, B. infantis and Lactobacillus acidophilus probiotics to prevent gut dysbiosis in preterm infants of 28+0–32+6 weeks of gestation … J Marißen, A Haiß, C Meyer, T Van Rossum, LM Buente, D Frommhold, ... BMJ open 9 (11), e032617, 2019 | 33 | 2019 |
| Meconium microbiome of very preterm infants across Germany J Klopp, P Ferretti, CU Meyer, K Hilbert, A Haiß, J Marißen, P Henneke, ... MSphere 7 (1), e00808-21, 2022 | 25 | 2022 |
| <? mode longmeta?> SPIRE: a Searchable, Planetary-scale mIcrobiome REsource TSB Schmidt, A Fullam, P Ferretti, A Orakov, OM Maistrenko, ... Nucleic Acids Research 52 (D1), D777-D783, 2024 | 24 | 2024 |
| Microbiome analysis across a natural copper gradient at a proposed northern Canadian mine site T Van Rossum, MM Pylatuk, HL Osachoff, EJ Griffiths, R Lo, M Quach, ... Frontiers in Environmental Science 3, 84, 2016 | 18 | 2016 |
| Force-induced polarized mitosis of endothelial and smooth muscle cells in arterial remodeling D Dajnowiec, PJB Sabatini, TC Van Rossum, JTK Lam, M Zhang, ... Hypertension 50 (1), 255-260, 2007 | 17 | 2007 |
| metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes T Van Rossum, PI Costea, L Paoli, R Alves, R Thielemann, S Sunagawa, ... Bioinformatics 38 (4), 1162-1164, 2022 | 15 | 2022 |
| The Composition of Midgut Bacteria in Aedes aegypti (Diptera: Culicidae) That Are Naturally Susceptible or Refractory to Dengue Viruses H Coatsworth, PA Caicedo, T Van Rossum, CB Ocampo, C Lowenberger Journal of Insect Science 18 (6), 12, 2018 | 15 | 2018 |
| Spatiotemporal dynamics of river viruses, bacteria and microeukaryotes TV Rossum, MI Uyaguari-Diaz, M Vlok, MA Peabody, A Tian, KI Cronin, ... bioRxiv, 259861, 2018 | 10 | 2018 |
