Florent E Angly

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Forest RohwerSan Diego State UniversityVerified email at mail.sdsu.edu
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
Mya BreitbartUniversity of South FloridaVerified email at marine.usf.edu
linda wegley kellyScripps Institution of Oceanography - UC San DiegoVerified email at ucsd.edu
Liz DinsdaleMatthew Flinders Fellow of Marine Biology, Professor, Flinders University, South AustraliaVerified email at flinders.edu.au
Rebecca Vega ThurberDistinguished Professor of Microbiology Oregon State UniversityVerified email at oregonstate.edu
Peter SalamonProfessor of Mathematics, San Diego State UniversityVerified email at sdsu.edu
Christelle DesnuesCNRS researcher, Mediterranean Institute of Oceanography, associated researcher IHU MéditerranéeVerified email at univ-amu.fr
Gene W. TysonProfessor, Centre for Microbiome Research, Queensland University of TechnologyVerified email at qut.edu.au
Bryan A. WhiteDepartment of Animal Sciences, University of IllinoisVerified email at illinois.edu
Robert OlsonArgonne National LaboratoryVerified email at mcs.anl.gov
Scott T. KelleyProfessor of Biology, San Diego State UniversityVerified email at mail.sdsu.edu
David L. ValentineNorris Presidential Chair, Professor of Earth Science and Biology, UC Santa BarbaraVerified email at geol.ucsb.edu
Olga PantosInstitute of Environmental Science and Research Ltd.Verified email at esr.cri.nz
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Robert SchmiederSan Diego State UniversityVerified email at sciences.sdsu.edu
Alejandro Reyes MuñozDepartamento de Ciencias Biológicas, Universidad de los AndesVerified email at uniandes.edu.co
Andrew C Heath, DPhilProfessor in Psychiatry, Washington University in St LouisVerified email at wustl.edu
Craig A CarlsonUniversity of California, Santa BarbaraVerified email at lifesci.ucsb.edu
Rachel ParsonsBermuda Institute of Ocean SciencesVerified email at bios.edu

Florent E Angly

Genomic data analyst, The University of Queensland

Verified email at uq.edu.au

Bioinformatics/biostatistics phage biology microbial ecology (meta)genomics coral reefs


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Viruses in the faecal microbiota of monozygotic twins and their mothers A Reyes, M Haynes, N Hanson, FE Angly, AC Heath, F Rohwer, JI Gordon Nature 466 (7304), 334-338, 2010	1332	2010
The marine viromes of four oceanic regions FE Angly, B Felts, M Breitbart, P Salamon, RA Edwards, C Carlson, ... PLoS biology 4 (11), e368, 2006	1140	2006
Functional metagenomic profiling of nine biomes EA Dinsdale, RA Edwards, D Hall, F Angly, M Breitbart, JM Brulc, ... Nature 452 (7187), 629-632, 2008	1129	2008
Metagenomic analysis of stressed coral holobionts RV Thurber, D Willner‐Hall, B Rodriguez‐Mueller, C Desnues, ... Environmental microbiology 11 (8), 2148-2163, 2009	712	2009
Microbial ecology of four coral atolls in the Northern Line Islands EA Dinsdale, O Pantos, S Smriga, RA Edwards, F Angly, L Wegley, ... PloS one 3 (2), e1584, 2008	507	2008
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals D Willner, M Furlan, M Haynes, R Schmieder, FE Angly, J Silva, ... PLoS One 4 (10), e7370, 2009	469	2009
Viral and microbial community dynamics in four aquatic environments B Rodriguez-Brito, LL Li, L Wegley, M Furlan, F Angly, M Breitbart, ... The ISME journal 4 (6), 739-751, 2010	465	2010
Viral diversity and dynamics in an infant gut M Breitbart, M Haynes, S Kelley, F Angly, RA Edwards, B Felts, ... Research in microbiology 159 (5), 367-373, 2008	408	2008
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome A Qu, JM Brulc, MK Wilson, BF Law, JR Theoret, LA Joens, ME Konkel, ... PLoS One 3 (8), e2945, 2008	351	2008
Biodiversity and biogeography of phages in modern stromatolites and thrombolites C Desnues, B Rodriguez-Brito, S Rayhawk, S Kelley, T Tran, M Haynes, ... Nature 452 (7185), 340-343, 2008	297	2008
CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction FE Angly, PG Dennis, A Skarshewski, I Vanwonterghem, P Hugenholtz, ... Microbiome 2 (1), 11, 2014	285	2014
Next generation sequence assembly with AMOS TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop Current Protocols in Bioinformatics 33 (1), 11.8. 1-11.8. 18, 2011	260	2011
Grinder: a versatile amplicon and shotgun sequence simulator FE Angly, D Willner, F Rohwer, P Hugenholtz, GW Tyson Nucleic acids research 40 (12), e94-e94, 2012	249	2012
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa RL Vega Thurber, KL Barott, D Hall, H Liu, B Rodriguez-Mueller, ... Proceedings of the National Academy of Sciences 105 (47), 18413-18418, 2008	248	2008
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes FE Angly, D Willner, A Prieto-Davó, RA Edwards, R Schmieder, ... PLoS computational biology 5 (12), e1000593, 2009	243	2009
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information F Angly, B Rodriguez-Brito, D Bangor, P McNairnie, M Breitbart, ... BMC bioinformatics 6 (1), 41, 2005	222	2005
Future reef decalcification under a business-as-usual CO2 emission scenario SG Dove, DI Kline, O Pantos, FE Angly, GW Tyson, O Hoegh-Guldberg Proceedings of the National Academy of Sciences 110 (38), 15342-15347, 2013	208	2013
Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome ME Berg Miller, CJ Yeoman, N Chia, SG Tringe, FE Angly, RA Edwards, ... Environmental microbiology 14 (1), 207-227, 2012	170	2012
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity D Willner, M Furlan, R Schmieder, JA Grasis, DT Pride, DA Relman, ... Proceedings of the National Academy of Sciences 108 (supplement_1), 4547-4553, 2011	170	2011
Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate H Tamaki, R Zhang, FE Angly, S Nakamura, PY Hong, T Yasunaga, ... Environmental microbiology 14 (2), 441-452, 2012	138	2012

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