| Marine microbial community dynamics and their ecological interpretation JA Fuhrman, JA Cram, DM Needham Nature Reviews Microbiology 13 (3), 133-146, 2015 | 801 | 2015 |
| Correlation detection strategies in microbial data sets vary widely in sensitivity and precision S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ... The ISME journal 10 (7), 1669-1681, 2016 | 722 | 2016 |
| Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates LC Xia, JA Steele, JA Cram, ZG Cardon, SL Simmons, JJ Vallino, ... BMC systems biology 5, 1-12, 2011 | 248 | 2011 |
| Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years JA Cram, CET Chow, R Sachdeva, DM Needham, AE Parada, JA Steele, ... The ISME journal 9 (3), 563-580, 2015 | 234 | 2015 |
| Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight CET Chow, R Sachdeva, JA Cram, JA Steele, DM Needham, A Patel, ... The ISME journal 7 (12), 2259-2273, 2013 | 176 | 2013 |
| Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency T Weber, JA Cram, SW Leung, T DeVries, C Deutsch Proceedings of the National Academy of Sciences 113 (31), 8606-8611, 2016 | 152 | 2016 |
| Efficient statistical significance approximation for local similarity analysis of high-throughput time series data LC Xia, D Ai, J Cram, JA Fuhrman, F Sun Bioinformatics 29 (2), 230-237, 2013 | 146 | 2013 |
| Short-term observations of marine bacterial and viral communities: patterns, connections and resilience DM Needham, CET Chow, JA Cram, R Sachdeva, A Parada, JA Fuhrman The ISME journal 7 (7), 1274-1285, 2013 | 145 | 2013 |
| Accurate genome relative abundance estimation based on shotgun metagenomic reads LC Xia, JA Cram, T Chen, JA Fuhrman, F Sun PloS one 6 (12), e27992, 2011 | 142 | 2011 |
| Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes JA Cram, LC Xia, DM Needham, R Sachdeva, F Sun, JA Fuhrman The ISME journal 9 (12), 2573-2586, 2015 | 119 | 2015 |
| Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling DM Needham, EB Fichot, E Wang, L Berdjeb, JA Cram, CG Fichot, ... The ISME journal 12 (10), 2417-2432, 2018 | 94 | 2018 |
| The role of particle size, ballast, temperature, and oxygen in the sinking flux to the deep sea JA Cram, T Weber, SW Leung, AMP McDonnell, JH Liang, C Deutsch Global Biogeochemical Cycles 32 (5), 858-876, 2018 | 86 | 2018 |
| Dilution reveals how viral lysis and grazing shape microbial communities JA Cram, AE Parada, JA Fuhrman Limnology and Oceanography 61 (3), 889-905, 2016 | 53 | 2016 |
| Hatchery crashes among shellfish research hatcheries along the Atlantic coast of the United States: A case study of production analysis at Horn Point Laboratory MW Gray, ST Alexander, BF Beal, T Bliss, CA Burge, JA Cram, M De Luca, ... Aquaculture 546, 737259, 2022 | 21 | 2022 |
| Vertical and seasonal patterns control bacterioplankton communities at two horizontally coherent coastal upwelling sites off Galicia (NW Spain) V Hernando-Morales, MM Varela, DM Needham, J Cram, JA Fuhrman, ... Microbial ecology 76, 866-884, 2018 | 21 | 2018 |
| Slow particle remineralization, rather than suppressed disaggregation, drives efficient flux transfer through the Eastern Tropical North Pacific Oxygen Deficient Zone JA Cram, CA Fuchsman, ME Duffy, JL Pretty, RM Lekanoff, JA Neibauer, ... Global Biogeochemical Cycles 36 (1), e2021GB007080, 2022 | 20 | 2022 |
| Human gut microbiota is associated with HIV-reactive immunoglobulin at baseline and following HIV vaccination JA Cram, AJ Fiore-Gartland, S Srinivasan, S Karuna, G Pantaleo, ... PLoS One 14 (12), e0225622, 2019 | 20 | 2019 |
| Variable particle size distributions reduce the sensitivity of global export flux to climate change SW Leung, T Weber, JA Cram, C Deutsch Biogeosciences 18 (1), 229-250, 2021 | 17 | 2021 |
| Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis D Ai, X Li, H Pan, J Chen, JA Cram, LC Xia BMC genomics 20, 117-128, 2019 | 13 | 2019 |
| Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains LC Xia, D Ai, JA Cram, X Liang, JA Fuhrman, F Sun BMC bioinformatics 16, 1-14, 2015 | 13 | 2015 |
