Benedict Borer
Benedict Borer
Postdoctoral Fellow, MIT
Verified email at
Cited by
Cited by
Spatial organization of bacterial populations in response to oxygen and carbon counter-gradients in pore networks
B Borer, R Tecon, D Or
Nature communications 9 (1), 769, 2018
Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH)
B Borer, M Ataman, V Hatzimanikatis, D Or
PLoS computational biology 15 (6), e1007127, 2019
The engineering of spatially linked microbial consortia–potential and perspectives
SB Said, R Tecon, B Borer, D Or
Current opinion in biotechnology 62, 137-145, 2020
Spatial organization in microbial range expansion emerges from trophic dependencies and successful lineages
B Borer, D Ciccarese, D Johnson, D Or
Communications biology 3 (1), 685, 2020
Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment
D Ciccarese, G Micali, B Borer, C Ruan, D Or, DR Johnson
The ISME Journal 16 (5), 1453-1463, 2022
Porous marine snow differentially benefits chemotactic, motile, and nonmotile bacteria
B Borer, IH Zhang, AE Baker, GA O'Toole, AR Babbin
PNAS nexus 2 (2), pgac311, 2023
Spatiotemporal metabolic modeling of bacterial life in complex habitats
B Borer, D Or
Current Opinion in Biotechnology 67, 65-71, 2021
Bacterial age distribution in soil–Generational gaps in adjacent hot and cold spots
B Borer, D Or
PLOS Computational Biology 18 (2), e1009857, 2022
Primary carbon sources and self-induced metabolic landscapes shape community structure in soil bacterial hotspots
B Borer, H Kleyer, D Or
Soil Biology and Biochemistry 168, 108620, 2022
Reduced gravity promotes bacterially mediated anoxic hotspots in unsaturated porous media
B Borer, J Jimenez-Martinez, R Stocker, D Or
Scientific reports 10 (1), 8614, 2020
Evaporation-induced hydrodynamics control plasmid transfer during surface-associated microbial growth
C Ruan, B Borer, J Ramoneda, G Wang, DR Johnson
npj Biofilms and Microbiomes 9 (1), 58, 2023
The media composition as a crucial element in high-throughput metabolic network reconstruction
B Borer, S Magnúsdóttir
Interface Focus 13 (2), 20220070, 2023
Physical structure and interstitial flows govern microbial life in microenvironments
R Shen, B Borer, D Ciccarese, MM Salek, AR Babbin
bioRxiv, 2023.09. 19.558408, 2023
Spatial organization in microbial range expansion emerges from trophic dependencies and successful lineages: source code
B Borer
ETH Zurich, 2020
Microscale advection governs microbial growth and oxygen consumption in macroporous aggregates
R Shen, B Borer, D Ciccarese, MM Salek, AR Babbin
Msphere 9 (4), e00185-24, 2024
Uncultivated DPANN archaea are ubiquitous inhabitants of global oxygen-deficient zones with diverse metabolic potential
IH Zhang, B Borer, R Zhao, S Wilbert, DK Newman, AR Babbin
Mbio, e02918-23, 2024
Microbially-mediated shallow calcium carbonate dissolution in marine snow particles: evidence from microfluidic stable isotope experiments
B Borer, AV Subhas, MG Hayden, RJ Woosley, AR Babbin
2024 Ocean Sciences Meeting, 2024
Surprising Links between the Microgeography and Demography of “Immortal” Soil Bacteria
D Or, S Bickel, B Borer
AGU23, 2023
Apparent nitrous acid dissociation across environmentally relevant temperatures in freshwater and seawater
B Borer, E Bi, R Woosley, A Babbin
A marriage made in soil-quantifying bacterial life in soil hotspots using individual-based and metabolic network modeling
B Borer
ETH Zurich, 2020
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