Bradley R. Jones
Bradley R. Jones
Department of Mathematics, Simon Fraser University
Verified email at
Cited by
Cited by
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data
LG Wang, TTY Lam, S Xu, Z Dai, L Zhou, T Feng, P Guo, CW Dunn, ...
Molecular biology and evolution 37 (2), 599-603, 2020
ANGES: reconstructing ANcestral GEnomeS maps
BR Jones, A Rajaraman, E Tannier, C Chauve
Bioinformatics 28 (18), 2388-2390, 2012
Phylogenetic approach to recover integration dates of latent HIV sequences within-host
BR Jones, NN Kinloch, J Horacsek, B Ganase, M Harris, PR Harrigan, ...
Proceedings of the National Academy of Sciences 115 (38), E8958-E8967, 2018
HIV-1 variants are archived throughout infection and persist in the reservoir
K Brooks, BR Jones, DA Dilernia, DJ Wilkins, DT Claiborne, S McInally, ...
PLoS pathogens 16 (6), e1008378, 2020
HIV diversity and genetic compartmentalization in blood and testes during suppressive antiretroviral therapy
RL Miller, R Ponte, BR Jones, NN Kinloch, FH Omondi, MA Jenabian, ...
Journal of virology 93 (17), 10.1128/jvi. 00755-19, 2019
Aquaculture mediates global transmission of a viral pathogen to wild salmon
GJ Mordecai, KM Miller, AL Bass, AW Bateman, AK Teffer, JM Caleta, ...
Science Advances 7 (22), eabe2592, 2021
Mastering developing new leadership for transformative change
B Jones, ME Harris, M Santana
Journal of the Academy of Business & Economics 8 (2), 66-74, 2008
Genetic Diversity, Compartmentalization, and Age of HIV Proviruses Persisting in CD4+ T Cell Subsets during Long-Term Combination Antiretroviral Therapy
BR Jones, RL Miller, NN Kinloch, O Tsai, H Rigsby, H Sudderuddin, ...
Journal of virology 94 (5), 10.1128/jvi. 01786-19, 2020
Tree shape‐based approaches for the comparative study of cophylogeny
M Avino, GT Ng, Y He, MS Renaud, BR Jones, AFY Poon
Ecology and evolution 9 (12), 6756-6771, 2019
Genetic complexity in the replication-competent latent HIV reservoir increases with untreated infection duration in infected youth
ZL Brumme, H Sudderuddin, C Ziemniak, K Luzuriaga, BR Jones, JB Joy, ...
Aids 33 (2), 211-218, 2019
172019 dating ancestors in phylogenetic trees in R
BR Jones, AFY Poon
Bioinformatics 33 (6), 932-934, 2017
Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study
H Sudderuddin, NN Kinloch, SW Jin, RL Miller, BR Jones, CJ Brumme, ...
Retrovirology 17 (1), 3, 2020
HIV proviral burden, genetic diversity, and dynamics in viremic controllers who subsequently initiated suppressive antiretroviral therapy
FH Omondi, H Sudderuddin, A Shahid, NN Kinloch, BR Jones, RL Miller, ...
MBio 12 (6), e02490-21, 2021
The global origins of resistance-associated variants in the non-structural proteins 5A and 5B of the hepatitis C virus
BR Jones, AYM Howe, PR Harrigan, JB Joy
Virus Evolution 4 (1), vex041, 2018
HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy
A Shahid, BR Jones, JSW Yang, W Dong, T Shaipanich, K Donohoe, ...
PLoS Pathogens 18 (11), e1010613, 2022
Proviral turnover during untreated HIV infection is dynamic and variable between hosts, impacting reservoir composition on ART
K Brooks, FH Omondi, RH Liang, H Sudderuddin, BR Jones, JB Joy, ...
Frontiers in microbiology 12, 719153, 2021
The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically …
A Shahid, S MacLennan, BR Jones, H Sudderuddin, Z Dang, ...
Journal of virology, e01655-23, 2024
Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir
BR Jones, JB Joy
Virus evolution 6 (2), veaa089, 2020
Tree hook length formulae, Feynman rules and B-series
BR Jones, K Yeats
Annales de l’Institut Henri Poincaré D 2 (4), 413-430, 2015
HIV reservoirs are dominated by genetically younger and clonally enriched proviruses
NN Kinloch, A Shahid, W Dong, D Kirkby, BR Jones, CJ Beelen, ...
Mbio 14 (6), e02417-23, 2023
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