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Brandon Brooks
Brandon Brooks
Computational Biologist
Dirección de correo verificada de berkeley.edu - Página principal
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dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
MR Olm, CT Brown, B Brooks, JF Banfield
The ISME journal 11 (12), 2864-2868, 2017
13372017
Schrödinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems
JB Emerson, RI Adams, CMB Román, B Brooks, DA Coil, K Dahlhausen, ...
Microbiome 5, 1-23, 2017
4502017
Clades of huge phages from across Earth’s ecosystems
B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ...
Nature 578 (7795), 425-431, 2020
3972020
Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
B Brooks, BA Firek, CS Miller, I Sharon, BC Thomas, R Baker, ...
Microbiome 2, 1-16, 2014
2892014
Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome
B Brooks, MR Olm, BA Firek, R Baker, BC Thomas, MJ Morowitz, ...
Nature communications 8 (1), 1814, 2017
1882017
Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
T Raveh-Sadka, BC Thomas, A Singh, B Firek, B Brooks, CJ Castelle, ...
Elife 4, e05477, 2015
1502015
Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates
MR Olm, CT Brown, B Brooks, B Firek, R Baker, D Burstein, K Soenjoyo, ...
Genome research 27 (4), 601-612, 2017
1092017
The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms
B Brooks, MR Olm, BA Firek, R Baker, D Geller-McGrath, SR Reimer, ...
Microbiome 6, 1-12, 2018
882018
Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
Microbiome 7, 1-16, 2019
622019
Disturbances of the perioperative microbiome across multiple body sites in patients undergoing pancreaticoduodenectomy
MB Rogers, V Aveson, B Firek, A Yeh, B Brooks, R Brower-Sinning, ...
Pancreas 46 (2), 260-267, 2017
572017
Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case
JC Young, C Pan, RM Adams, B Brooks, JF Banfield, MJ Morowitz, ...
Proteomics 15 (20), 3463-3473, 2015
572015
Concentrations and sources of airborne particles in a neonatal intensive care unit
D Licina, S Bhangar, B Brooks, R Baker, B Firek, X Tang, MJ Morowitz, ...
PloS one 11 (5), e0154991, 2016
442016
Strain-resolved microbial community proteomics reveals simultaneous aerobic and anaerobic function during gastrointestinal tract colonization of a preterm infant
B Brooks, RS Mueller, JC Young, MJ Morowitz, RL Hettich, JF Banfield
Frontiers in Microbiology 6, 139284, 2015
352015
High-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans
R Creswell, J Tan, JW Leff, B Brooks, MA Mahowald, R Thieroff-Ekerdt, ...
Genome Medicine 12, 1-16, 2020
212020
A pilot study on the effect of prebiotic on host-microbial co-metabolism in peritoneal dialysis patients
B Gao, N Alonzo-Palma, B Brooks, A Jose, D Barupal, M Jagadeesan, ...
Kidney International Reports 5 (8), 1309-1315, 2020
142020
dRep: a tool for fast and accurate genome de-replication that enables tracking of microbial genotypes and improved genome recovery from metagenomes
MR Olm, CT Brown, B Brooks, JF Banfield
bioRxiv, 108142, 2017
122017
Pilot study of sources and concentrations of size-resolved airborne particles in a neonatal intensive care unit
S Bhangar, B Brooks, B Firek, D Licina, X Tang, MJ Morowitz, JF Banfield, ...
Building and Environment 106, 10-19, 2016
122016
Social media marketing on Twitter: An investigation of the involvement-messaging-engagement link
CK Coursaris, W van Osch, B Brooks
HCI in Business: First International Conference, HCIB 2014, Held as Part of …, 2014
72014
Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes
MR Olm, PT West, B Brooks, BA Firek, R Baker, MJ Morowitz, JF Banfield
bioRxiv, 324566, 2018
22018
Effects of organization-level Internet governance: a mixed-method case study approach to social media governance
BA Brooks
Michigan State University, 2015
22015
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Artículos 1–20